1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttatctagctgataagagtctatggttcatctgaaacttttagtttgtgttttgaaatctagaaaataagtctctagtttgcatttggttttcttcagGCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTGATTCCAAATGACCGTCTGCTTGACATAGCTGATGAGCAGATGCCTCTTC
species | Glycine max |
transcript | GLYMA02G46530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGGTGTTACCTATCCCCTCAGTTTTGAAGGACGTAAGAGATCCCTGCAG GCCTTTGAAGCCATCEST: gi|16277659|gb|BI942496.1|BI942496
genomic: GTGTTGTTACCTATCCCTTCAGTTTTGAAGGACGTAAGAGATCCTTGCAGgcaggtgtcc ... ttttcttcagGCCTTTGAAGCCATC
EST: GTGTTGTTACCTATCCCTTCAGTTTTGAAGGACGTAAGAGATCCTTGCAG GCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTG
genomic: GTGTTGTTACCTATCCCTTCAGTTTTGAAGGACGTAAGAGATCCTTGCAGgcaggtgtcc ... ttttcttcagGCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTG
tttgtgttttgaaatctagaaaataagtctctagtttgcatttggttttcttcagGCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTGATTCCAAATGACCGTCTGCTTGACATAGCTGATGAGCAGATGCCTCTTC
ttttcttc CT-rich tract
aaatctagaaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttatctagctgataagagtctatggttcatctgaaacttttagtttgtgttttgaaatctagaaaataagtctctagtttgcatttggttttcttcagGCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTGATTCCAAATGACCGTCTGCTTGACATAGCTGATGAGCAGATGCCTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - -gctgata
- - - - - - - - - -gtctatg
- - - - - - - - - - - - - - -catctga
- - - - - - - - - - - - - - - - - - - - - - gtttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt