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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatatgtcatgctttttttgaacttcaatgctgataaatttccaaaatcttacacatctgaaatgtagCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACTAGTGATG

Basic information

species Glycine max
transcript GLYMA02G46350.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193396717|gb|FK362289.1|FK362289
EST:     CAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAG                         CTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACT
genomic: CAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGgtaaaaatat ... tgaaatgtagCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACT
EST: gi|17518867|gb|BM187909.1|BM187909
EST:     CAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAG                         CTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACT
genomic: CAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGgtaaaaatat ... tgaaatgtagCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttgaacttcaatgctgataaatttccaaaatcttacacatctgaaatgtagCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACTAGTGATG
                                 atcttac  putative branch site (score: 3)
 ataaatttccaaaat  TA-rich tract