1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tttgcctattcaattatacaaacgagtatcttattgattttccaattcaattacacatatgggttgctttaatgatgtatgggtaaaaactttgattcagGCTTCAGAAGCAATTCCCTCAGTTGAAAGCTTAACTGCTGCAACTAAAGATCCCATTCCTCCATCATCTGTGCTAAAGCAATTGGCTATAGCTGTTGA
species | Glycine max |
transcript | GLYMA02G46190.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGACGATAATTTGTACCTCCTGAACATGAAGAATGATCTTGAGGCCAAG GCTTCAGAAGCAATTCCCTCAGTTGAAAGCTTAACTGCTGCAACTAAAGAT
genomic: ATGACGATAATTTGTACCTCCTGAACATGAAGAATGATCTTGAGGCCAAGgtaagaaaat ... tttgattcagGCTTCAGAAGCAATTCCCTCAGTTGAAAGCTTAACTGCTGCAACTAAAGAT
ttcaattacacatatgggttgctttaatgatgtatgggtaaaaactttgattcagGCTTCAGAAGCAATTCCCTCAGTTGAAAGCTTAACTGCTGCAACTAAAGATCCCATTCCTCCATCATCTGTGCTAAAGCAATTGGCTATAGCTGTTGA
taaaaactttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgcctattcaattatacaaacgagtatcttattgattttccaattcaattacacatatgggttgctttaatgatgtatgggtaaaaactttgattcagGCTTCAGAAGCAATTCCCTCAGTTGAAAGCTTAACTGCTGCAACTAAAGATCCCATTCCTCCATCATCTGTGCTAAAGCAATTGGCTATAGCTGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
-ttgccta
- - - - - - - - - - - - - - - - - - - - - caattca
- - - - - - - - - - - - - - - - - - - - - - - - - - acacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaac