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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattccccttaattttcattgttgattgagagttaaggtggcattagcttgtaacattggcgacataacatggttgcttcttcaatgatgtttgcatggtatcctctagTGCTGTTTTGGCTGACATTATTCTGAAAGAGAAGCTACACAATCTTGGGATATTGGGCTGTATAATGTGCATTGCTGGTAGTATCATTATTGTTATTCAT

Basic information

species Glycine max
transcript GLYMA02G44980.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023643|gb|BM094677.1|BM094677
EST:     GCTCCAGCAGTCCTAGTTACTCCTCTTGGTGCATTAAGTATTATTGTGAG                         TGCTGTTTTGGCTGACATTATTCTGAAAGAGAAGCTACACAATCTTGGGAT
genomic: GCTCCAGCAGTCCTAGTTACTCCTCTTGGTGCATTAAGTATTATTGTGAGgtattcccct ... tatcctctagTGCTGTTTTGGCTGACATTATTCTGAAAGAGAAGCTACACAATCTTGGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattggcgacataacatggttgcttcttcaatgatgtttgcatggtatcctctagTGCTGTTTTGGCTGACATTATTCTGAAAGAGAAGCTACACAATCTTGGGATATTGGGCTGTATAATGTGCATTGCTGGTAGTATCATTATTGTTATTCAT
        acataac  putative branch site (score: 3)
                                             tatcctct  putative PPT
          ataacat  TA-rich tract