Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaataattacttctccaatcttaattatgcagtttcctttacatctatctacccttttttttgtgatagtagattgatgaaatgaacctttatggcagGTTGGTGGTATGGTGTTGTAGGCCACTTGGAAGTATGCGATGGGAATGAAAATTACTGCCGTTGTCATAGTAGTGGTGAGCTAATGCATTTTCCATTTAA

Basic information

species Glycine max
transcript GLYMA02G44660.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44660.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g17390.1 (Oryza sativa), 3'ss of exon 3
------------------------------------------------aaaaataattacttctccaatcttaattatgc--agtttcctttacatctatc--tacccttttttttgtg-atagtagattgatgaa---atgaacctttatggcagGTTGGTGGTATGGTGTTGTAGGCCACTTGGAAGTATGCGATGGGAATGAAAATTACTGCCGTTGTCATAGTAGTGGTGAGCTAATGCATTTTCCATTTAA
                                                | ||  ||| |    | | || |    |||||  |  ||   | | |   ||    |   ||||    ||| | |||   || ||  |    |     | | ||||||| ||||||||||| ||||| |||||||||||   ||| ||||| | |||  | |  || || ||||||  |||||                         
gtatgttcccgagcacccaacaacgcaaatgctttggacagtgctagaagaaccaataaacatttccatatgggatatgctaatcttatctgatagtgatgaggagtattttaccagtggacagtgtgttcattcatgtgttgctatgtttggcagGCTGGTGGTATGGAGTTGTTGGCCACTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG-------------------------

upper sequence: GLYMA02G44660.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0009g02700.t01 (Vitis vinifera), 3'ss of exon 3
-------aaaaataattacttctccaatcttaattatgcagtttcctttacatctatctacccttttttttgtgatagtagattgatgaaatgaacctttatggcagGTTGGTGGTATGGTGTTGTAGGCCACTTGGAAGTATGCGATGGGAATGAAAATTACTGCCGTTGTCATAGTAGTGGTGAGCTAATGCATTTTCCATTTAA
         ||| ||  | ||||  | ||||    ||  |    |   |  ||     | |   ||  ||     |  | |||  ||||  ||      ||| |||||||||||||||||| ||||||| |||||||||  ||| ||||||||||||  ||| ||||| ||||||| |||||                         
gcacacctcaaacaa--atttctttagtcttt-caatataaaaacaaatgaattatattgcaggttgattcac--tgcttgat--atgaggtgctatgatattgcagGTTGGTGGTATGGTATTGTAGGACACTTGGAATCATGTGATGGGAATGAATCTTATTGCCGCTGTCATAATAGTG-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259413|gb|BG882321.1|BG882321
EST:     CGGTGATCACGTAGAGATTCAGTGGAGAAGAAACAAAGAATTTCCTTATG                         GTTGGTGGTATGGTGTTGTAGGCCACTTGGAAGTATGCGATGGGAATGAAA
genomic: CGGTGATCACGTAGAGATTCAGTGGAGAAGAAACAAAGAATTTCCTTATGgtttgttcct ... tttatggcagGTTGGTGGTATGGTGTTGTAGGCCACTTGGAAGTATGCGATGGGAATGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatctacccttttttttgtgatagtagattgatgaaatgaacctttatggcagGTTGGTGGTATGGTGTTGTAGGCCACTTGGAAGTATGCGATGGGAATGAAAATTACTGCCGTTGTCATAGTAGTGGTGAGCTAATGCATTTTCCATTTAA
                            gattgat  putative branch site (score: 4)
                                           cctttat  putative PPT
           ttttttttgtgata  TA-rich tract