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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgacttgatagtatacatgaagtgtaagatattattgcagttgtactgaagctgctaagtgaactaattcaactaatttgatcattgggatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGC

Basic information

species Glycine max
transcript GLYMA02G44460.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44460.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g46750.1 (Oryza sativa), 3'ss of exon 3
tttgacttgatagtatacatga-agtgtaagatattattgcagttgtactgaagctgctaagtgaactaattcaactaatttgatcattgggatttgttagGCTGCCAC-TGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGC------
   |     |||  ||   |   | ||||||  ||| ||  | |||    |    | |    ||  || | | | ||  ||  || ||     ||||     || |    |||||| |||||||||||||| || ||||| |||||||||||||| |||||||| ||||| |||||||| ||  | |  ||| | ||           
---gggagtataacattttttttactgtaag-cattgtttgaattgcttggtgtttcccttttg--ctgacttagct--ttgtataatccatttttggccctctacagGATGCTGATGAAGATGATGATGACCTGGATCTTTTTGGTGATGAGACCGAGGAAGACAAGAAAGCAGCAGATGAGCGTGCAGCTTCCAAGGCCTCTTCAA

upper sequence: GLYMA02G44460.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G439201_T04 (Zea mays), 3'ss of exon 2
tttgacttgatagtatacatgaagt-gtaagatattattgcagttgtactgaagctgctaagtgaactaattcaactaatttg--atcattgggatttgttagGCTGCCACTGCTGAA-GAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGC------------
           |   ||  ||  || ||  ||| | ||||||    | |  |   ||||   |  |  ||| |  ||  ||||   ||| ||   | || |       | |  | |   || || |||||||| |||||||| ||||||||||| || ||||| || ||||||||||| || ||  | |  || |||   |||             
---------tcaacctatttgtcgttgtgtgat-taattgca----tgccaagtatgctttat--atcaatgcttcttttttgttgtcactgtcttctgcttttaattctcgacagGCTGAGGACGATGATGACCTTGATCTTTTTGGTGATGAAACTGAGGAGGACAAGAAGGCAGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAA

upper sequence: GLYMA02G44460.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G439201_T01 (Zea mays), 3'ss of exon 1
tttgacttgatagtatacatgaagtgtaagatattattgcagttgtactgaagctgctaagtgaactaattcaactaatttgatcattgggatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGC---------------------
                                                                                       |  | |||  ||     | || |  |  || || |||||||| |||||||| ||||||||||| || ||||| || ||||||||||| || ||  | |  || |||   |||                      
---------------------------------------------------------------------------------------tctgcttt--taattctcgacag--gctgaggacgatgatgaccttgatctttttggtgatgaaactgaggaggacaagaaggcagctgatgagcgtgccgccgCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA

upper sequence: GLYMA02G44460.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G19510.1 (Arabidopsis thaliana), 3'ss of exon 3
tttgacttgatagtatacatgaagtgtaagatattattgcagttgtactgaagctgctaagtgaac-------taattcaactaatttg-atcattgggatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGC
   |  |    ||  ||  |   ||    ||  | |||| ||||    |     || |  |||          |  ||   |||  ||| || ||||  |   |  |  ||||  |||| |  || |||||||||||  | |||||||||||||| ||||| || ||||| ||||| || |||||||| |||||||||||||| |   
---ggatcacgagc-tatgtttggtaggggaattgattggagtttggtttggaatgttgtgtgtgtgtgtgtgtgtttacgctatcttgcataattgtcaacagGCAC-CTGCAGCTGCAGCTGATGATGATGATGACATGGATCTCTTTGGTGACGAGACCGAAGAAGAAAAGAAAGCTGCAGAGGAGAGGGAGGCTGCTAAGA---

upper sequence: GLYMA02G44460.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0009g02410.t01 (Vitis vinifera), 3'ss of exon 3
tttgacttgatagtatacatgaagtgtaagatattat---tgcagttgtactgaagctgctaagtgaactaattcaactaatttgatcattgggatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGC
   |  |  ||  | |   || | |  ||  |  ||    | ||  ||   | |     || |||    | | | |   | |||     || ||||||  ||||||||  |||||| ||| ||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||| || ||||||||  ||   ||| 
--ggtatacattttgtgtctgtatttgaatttcctaagtgtccatatgctttaatttccctcagtcttatgaat-actcatttttcctctttggatttactagGCTGCTCCTGCTGGAGATGATGACGATGACCTTGATCTCTTTGGTGATGAGACAGAGGAGGAGAAGAAGGCAGCAGAAGAGAGGGAGGCATCTGTTAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41145797|gb|CK606008.1|CK606008
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCCCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|13791524|gb|BG654115.1|BG654115
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|308098678|gb|HO760419.1|HO760419
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|7925296|gb|AW831322.1|AW831322
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|192296967|gb|FG990283.1|FG990283
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|41145960|gb|CK606171.1|CK606171
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|14259721|gb|BG882629.1|BG882629
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|38191164|gb|CF920370.1|CF920370
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|192299184|gb|FG990456.1|FG990456
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|298166777|gb|HO010216.1|HO010216
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTT-GGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|298190179|gb|HO032300.1|HO032300
EST:     TAAGACTCAGTGGCGCCGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|192314009|gb|FK010345.1|FK010345
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAGGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|6845830|gb|AW348120.1|AW348120
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|192332130|gb|FK024590.1|FK024590
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|16519545|gb|BI347330.1|BI347330
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|192314010|gb|FK010346.1|FK010346
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAGGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|17022325|gb|BM093359.1|BM093359
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|19052795|gb|BM731462.1|BM731462
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|4306961|gb|AI443979.1|AI443979
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|298169624|gb|HO020984.1|HO020984
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|9259452|gb|BE347599.1|BE347599
EST:     AAGATTTAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: AAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|298194998|gb|HO043526.1|HO043526
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|9563902|gb|BE473411.1|BE473411
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|151409528|gb|EV279336.1|EV279336
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|17963362|gb|BM270112.1|BM270112
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|14259428|gb|BG882336.1|BG882336
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|298169772|gb|HO021132.1|HO021132
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|18040489|gb|BM308783.1|BM308783
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|12689248|gb|BG155584.1|BG155584
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|298190147|gb|HO032268.1|HO032268
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|254342849|gb|GR859011.1|GR859011
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|298198832|gb|HO042195.1|HO042195
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|26048859|gb|CA785312.1|CA785312
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|9565730|gb|BE475239.1|BE475239
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|21889907|gb|BQ743120.1|BQ743120
EST:     TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
EST: gi|33388439|gb|CA851646.1|CA851646
EST:     TAAGATTCAGNGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCG                         GCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG
genomic: TAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGgtatgctttt ... gatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactgaagctgctaagtgaactaattcaactaatttgatcattgggatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGC
                     taattcaactaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttgacttgatagtatacatgaagtgtaagatattattgcagttgtactgaagctgctaagtgaactaattcaactaatttgatcattgggatttgttagGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- tgacttg
- - - - - - - - - -tgaagtg
- - - - - - - - - - - - - - - - - - - gcagttg
- - - - - - - - - - - - - - - - - - - - - - - - - aagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgaac