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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcactggctttacagaaccttactcccttcctgaagtaactgccattttttttcatacacaaggatgtttatcttccaatacttgttgcatgcattgcagATTCTGGACTCATTTGGTAATGGCATATGCTTTTACCTTCTGGACATGCTATATCTTGAAAAGGGAGTATCAGATAGTTGCAACAATGAGATTGCATTTT

Basic information

species Glycine max
transcript GLYMA02G43910.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43910.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G15430.1 (Arabidopsis thaliana), 3'ss of exon 3
tcactggctttacagaaccttactcccttcctgaagtaactgccattttttttcatacacaaggatgtttatcttccaatacttgttgc--atgcattgcagATTCTGGACTCATTTGGTAATGGCATATGCTTTTACCTTCTGGACATGCTATATCTTGAAAAGGGAGTATCAGATAGTTGCAACAATGAGATTGCATTTT
          ||    |   | ||||     ||  ||  ||     ||| ||||||    | || |  ||||   |     | |  | |  ||    || ||||| |||   ||||||   ||||| |||||  |||||||||||||||||| |||| ||||||| ||||| ||||   | ||   ||||||| | || |||
---------gtaagagatacttctccgagtttg--gtggctttttctttgtttcat---tatggttacttattcactggatcctcctcctcatcttctgtagATTTTGGGTGCATTTGTGTATGGCTTATGCGATTACCTTCTGGACATGCTTTATCCTGAAAAGAGAGTACCAGAATATAGCTTTAATGAGACTACAGTTT

upper sequence: GLYMA02G43910.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0059g01090.t01 (Vitis vinifera), 3'ss of exon 2
tcactggctttacagaaccttactcccttcctgaagtaactgccatttttt---ttcatacacaaggatgtt-----tatcttccaatacttgttgcatgcattgcagATTCTGGACTCATTTGGTAATGGCATATGCTTTTACCTTCTGGACATGCTATATCTTGAAAAGGGAGTATCAGATAGTTGCAACAATGAGATTGCATTTT
         || |  ||   |   |  |   || |||  ||    ||  |     |  |     |||||  |     | ||||  | |  ||      ||  || |||||| |||||||||||||||||||| |||| |||| |||||||||| || ||| | ||||||| ||||||| | ||||||||||||||||| || ||||||
--------cttccttaatgatgaactttcattgcagttgctttgcttgatcagacttgtgtggtaggattctactcatttcttttattgttttccttttgggttacagATTTTGGACTCATTTGGTAATGGCTTATGTTTTTTCCTTCTGGACGTGTTATGTGTTGAAAAAGGAGTATGAAATAGTTGCAACAATGAGGTTACATTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701364|gb|BW655960.1|BW655960
EST:     AGTCAGATAGATAAGCTTTCTATTTCNAATATTCCAACCGGATCAAATAG                         ATTCTGGACTCATTTGGTAATGGCATATGCTTTTACCTTCTGGACATGCTA
genomic: AGTCAGATAGATAAGCTTTCTATTTCAAATATTCCAACCGGATCAAATAGgtatgcaaac ... tgcattgcagATTCTGGACTCATTTGGTAATGGCATATGCTTTTACCTTCTGGACATGCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttcatacacaaggatgtttatcttccaatacttgttgcatgcattgcagATTCTGGACTCATTTGGTAATGGCATATGCTTTTACCTTCTGGACATGCTATATCTTGAAAAGGGAGTATCAGATAGTTGCAACAATGAGATTGCATTTT
                   atgtttat  TA-rich tract