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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtgtagttctttatttttaatcataactgcagtttcaacaactcattcaattttgctagcaataacttttggtgatcaataatgcagATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG

Basic information

species Glycine max
transcript GLYMA02G43550.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327904|gb|FK022127.1|FK022127
EST:     TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTG                         ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
genomic: TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTGgtatggtgta ... aataatgcagATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
EST: gi|9985819|gb|BE660046.1|BE660046
EST:     TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTG                         ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
genomic: TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTGgtatggtgta ... aataatgcagATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
EST: gi|298182544|gb|HO031279.1|HO031279
EST:     TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTG                         ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
genomic: TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTGgtatggtgta ... aataatgcagATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
EST: gi|21994307|gb|BQ785835.1|BQ785835
EST:     TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTG                         ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
genomic: TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTGgtatggtgta ... aataatgcagATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
EST: gi|20813502|gb|BQ297980.1|BQ297980
EST:     TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTG                         ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
genomic: TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTGgtatggtgta ... aataatgcagATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
EST: gi|7926296|gb|AW832322.1|AW832322
EST:     TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTG                         ATGTCAGGAACCACCCAGTTATAATTCACTGTGAGCGTGGAAAG
genomic: TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTGgtatggtgta ... aataatgcagATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
EST: gi|20498278|gb|BQ273208.1|BQ273208
EST:     TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTG                         ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
genomic: TGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTTCTTGgtatggtgta ... aataatgcagATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcaacaactcattcaattttgctagcaataacttttggtgatcaataatgcagATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG
                           caataac  putative branch site (score: 2)
            attcaatttt  TA-rich tract