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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcttgctgcaatctctctctccctctactctaaattattgctaagtagctaatgttttccatttttttttctttcctctgtttgcagtagttggtcattatcttaccactgatttctatgttacatctgtttttacttattgcaacaaatggtgtttcatactttcatttgtagGTACAAACTGATCTCCACTTTATAAAAGAGGACATAAATGCTGTGGAGAAACATAGAATGGAATTGTATCGTGCACGGGACAGGTACTCTGTAAAATTGC

Basic information

species Glycine max
transcript GLYMA02G43540.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43540.2 (Glycine max), 3'ss of exon 3
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgtgcttgctgcaatctctctctccctctactctaaattattgctaagtagctaatgttttccatttttttttctttcctctgtttgcagtagttggtcattatcttaccactgatttctatgttacatct---gtttttacttattgcaacaaatggtgtttcatactttcatttgtagGTACAAACTGATCTCCACTTTATAAAAGAGGACATAAATGCTGTGGAGAAACATAGAATGGAATTGTATCGTGCACGGGACAGGTACTCTGTAAAATTGC
                                                                                ||| |    | || |         | | ||| |||| |  ||  | | ||||     | |||   | | |    | |  ||| |  |   |     ||||||| |||||||||||||| | ||| ||||| || |||||||| || |||| ||||||||| || || || || ||  ||||||| || |||||||| ||||
--------------------------------------------------------------------------------tctatcca-actattcatgagacgtataacccctgaatgttagatgagatctcagaatattatagaattctgtcatttatgtcttctctatcttaatgtagGTGCAAACTGATCTCCAGTATATTAAAGAAGATATAAATGCCGTTGAGAGACATAGAATAGATTTATACCGAGCTAGGGACAGATATTCTGTAAAGTTGC

upper sequence: GLYMA02G43540.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 3
gtgtgcttgctgcaatctctctctccctctactctaaattattgctaagtagctaatgttttccatttttttttctttcctctgtttgcagtagttggtcattatcttaccactgatttctatgttacatctgtttttacttattgcaacaaatggtgtttcatactttcatttgtagGTACAAACTGATCTCCACTTTATAAAAGAGGACATAAATGCTGTGGAGAAACATAGAATGGAATTGTATCGTGCACGGGACAGGTACTCTGTAAAATTGC
                                                                          ||    |  | || |  |   ||   | | ||||       | ||  |    ||||   ||| || |||     |   ||    |||    | ||  | |||||  ||||| ||||||||| | | | || ||||||||||||| ||| |||| ||||||||| || ||||| || |   ||||||||||||| |||||| |||
-----------------------------------------------------------------------gacctgctttaggattactttt-ctgaaaactgtctttgttgaaactttga----acatggatttataattaggttgatggatttcatttttcccctt--tctgtagACACAAAATGATCTCCAGTATGTCAAGGAGGACATAAATGTTGTAGAGAGACATAGAATAGAGTTGTACCGGGTGAGGGACAGGTACTCAGTAAAACTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814676|gb|BI786951.1|BI786951
EST:     TAGACTTCTTGCATTGCTTACGCAAGCAAAAAGTTGATGAGTTGAAGGAG                         GTACAAACTGATCTCCACTTTATAAAAGAGGACATAAATGCTGTGGAGAAA
genomic: TAGACTTCTTGCATTGCTTACGCAAGCAAAAAGTTGATGAGTTGAAGGAGgtgtgcttgc ... tcatttgtagGTACAAACTGATCTCCACTTTATAAAAGAGGACATAAATGCTGTGGAGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacatctgtttttacttattgcaacaaatggtgtttcatactttcatttgtagGTACAAACTGATCTCCACTTTATAAAAGAGGACATAAATGCTGTGGAGAAACATAGAATGGAATTGTATCGTGCACGGGACAGGTACTCTGTAAAATTGC
                                          ctttcattt  CT-rich tract
        tgtttttacttatt  TA-rich tract