Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccctaccaccaccaaaagaactttgtctgtcccaatatatatgtttctattgatttggttggatgaatgatttctttttgaaatttttatcttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG

Basic information

species Glycine max
transcript GLYMA02G43080.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 4
---ccctaccaccaccaaaagaactttgtctgtcccaatatatatgtttctattgatttggttggatgaatgatttctttttgaaatttttatcttttcac-agATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG
    ||| |     |  | ||||  |  |||  |  || | |  ||      |   | ||||||   | |   |||||| |  |  || |||||| || || ||||||||| || || || || || |||||||||||||| || || |||||||| || ||||||||| | ||||| ||  | |||||||| |||||||||
acatcctgct-ttgctgatagaatctc-tcta-ctaaaaacacttgaactcctcattctggttgttggcactgtttcttct-aattttgttatctgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254338889|gb|GR847606.1|GR847606
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|21602405|gb|BQ612736.1|BQ612736
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|6567163|gb|AW234786.1|AW234786
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|7147515|gb|AW509437.1|AW509437
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|6746785|gb|AW317241.1|AW317241
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|6951700|gb|AW423768.1|AW423768
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|4292427|gb|AI441903.1|AI441903
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|6502344|gb|AW203717.1|AW203717
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTACGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|9439986|gb|BE440497.1|BE440497
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|7926117|gb|AW832143.1|AW832143
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|213600643|gb|DB968775.1|DB968775
EST:     TGTTGATGGAAAAGTCAGAACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|298176444|gb|HO026679.1|HO026679
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|4397449|gb|AI496446.1|AI496446
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|8282832|gb|BE020393.1|BE020393
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|213601395|gb|DB968711.1|DB968711
EST:     TGTTGATGGAAAAGTCAGAACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|12772358|gb|BG237285.1|BG237285
EST:     GTTGATGGAAAAGTCAGGACTGACAAGNACTTCCCCTGTTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: GTTGATGGAAAAGTCAGGACTGACAAG-ACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|298180910|gb|HO022349.1|HO022349
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|298171801|gb|HO021393.1|HO021393
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|11687722|gb|BF595398.1|BF595398
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|10846499|gb|BF069362.1|BF069362
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|12773098|gb|BG238025.1|BG238025
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|11413771|gb|BF425782.1|BF425782
EST:     TGTTGATGGAAAAGTCAGAACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|6951685|gb|AW423753.1|AW423753
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|27426851|gb|CA938371.1|CA938371
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|20498572|gb|BQ273502.1|BQ273502
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|24136781|gb|BU927291.1|BU927291
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|209711614|gb|BW671325.1|BW671325
EST:     TGTTGATGGAAAAGTCAGAACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|8827735|gb|BE211465.1|BE211465
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|6719056|gb|AW306703.1|AW306703
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|209722813|gb|BW682886.1|BW682886
EST:     TGTTGATGGAAAAGTCAGAACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|13787407|gb|BG649999.1|BG649999
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|209712826|gb|BW684181.1|BW684181
EST:     TGTTGATGGAAAAGTCAGAACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|298190664|gb|HO032785.1|HO032785
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|14258782|gb|BG881690.1|BG881690
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|19934743|gb|BQ079773.1|BQ079773
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|8283599|gb|BE021158.1|BE021158
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|8284693|gb|BE022235.1|BE022235
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|4397095|gb|AI496092.1|AI496092
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|213618083|gb|DB963716.1|DB963716
EST:     TGTTGATGGAAAAGTCAGAACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAAAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|10847962|gb|BF071655.1|BF071655
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCTAGAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|192323079|gb|FK017020.1|FK017020
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|213612156|gb|DB956865.1|DB956865
EST:     TGTTGATGGAAAAGTCAGAACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|16996882|gb|BM086254.1|BM086254
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|7692719|gb|AW760819.1|AW760819
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|209714483|gb|BW684859.1|BW684859
EST:     TGTTGATGGAAAAGTCAGAACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|4396174|gb|AI495171.1|AI495171
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|10844949|gb|BF068138.1|BF068138
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTACATGG                         ATGTTGTTTCAATCCCGAAAAC
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAAC
EST: gi|37993906|gb|CF805652.1|CF805652
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|37993916|gb|CF805662.1|CF805662
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|254338581|gb|GR845724.1|GR845724
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTTCAATCCCAAAAACCA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTT-CAATCCCAAAAACCA
EST: gi|9440022|gb|BE440533.1|BE440533
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|213611713|gb|DB960641.1|DB960641
EST:     TGTTGATGGAAAAGTCAGAACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|7327050|gb|AW620848.1|AW620848
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
EST: gi|19934720|gb|BQ079750.1|BQ079750
EST:     TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGG                         ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA
genomic: TGTTGATGGAAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGgtatgtttgt ... cttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctattgatttggttggatgaatgatttctttttgaaatttttatcttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG
  tattgat  putative branch site (score: 3)
                                      tttttatcttttcac  putative PPT
                    aatgatttctttttga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccctaccaccaccaaaagaactttgtctgtcccaatatatatgtttctattgatttggttggatgaatgatttctttttgaaatttttatcttttcacagATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG