1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acttttatcaaataaattttctgttttcaaaatcatttctcaaacattacaagattattttgtttttatgtcatgtttatgcctagtctatgtatttcagGTGCTTAACATTCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACACCTGTGGAACTCATTAGGAAGGGAGACAAGGTTGGATCTTCTGAAGCTG
species | Glycine max |
transcript | GLYMA02G42260.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAG GTGCTTAACATTTCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACAEST: gi|9898939|gb|BE607907.1|BE607907
genomic: TTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAGgttggcaatg ... tgtatttcagGTGCTTAACATTCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACA
EST: TTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAG GTGCTTAACATTCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACAEST: gi|37996490|gb|CF808079.1|CF808079
genomic: TTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAGgttggcaatg ... tgtatttcagGTGCTTAACATTCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACA
EST: TTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAG GTGCTTAACATTCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACAEST: gi|7458651|gb|AW666101.1|AW666101
genomic: TTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAGgttggcaatg ... tgtatttcagGTGCTTAACATTCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACA
EST: TTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTCTCTTGCAG GTGCTTAACATTCCTACCAAGATTAACAAGGGEST: gi|58023204|gb|CX709945.1|CX709945
genomic: TTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAGgttggcaatg ... tgtatttcagGTGCTTAACATTCCTACCAAGATTAACAAGGG
EST: TTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAG GTGCTTAACATTCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACAEST: gi|254344862|gb|GR851345.1|GR851345
genomic: TTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAGgttggcaatg ... tgtatttcagGTGCTTAACATTCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACA
EST: TTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAG GTGCTTAACATTCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACA
genomic: TTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAGgttggcaatg ... tgtatttcagGTGCTTAACATTCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACA
attacaagattattttgtttttatgtcatgtttatgcctagtctatgtatttcagGTGCTTAACATTCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACACCTGTGGAACTCATTAGGAAGGGAGACAAGGTTGGATCTTCTGAAGCTG
attattttgtttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttttatcaaataaattttctgttttcaaaatcatttctcaaacattacaagattattttgtttttatgtcatgtttatgcctagtctatgtatttcagGTGCTTAACATTCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTACACCTGTGGAACTCATTAGGAAGGGAGACAAGGTTGGATCTTCTGAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG