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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttattctccaatcaaaactaaagtttcgcttcatcactcagctgttgtgtgttaattattaacttgttctttcctcttttttatctactccggtacagATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTTAAGTTCTATCTATTCTGAGGTGATGATGATGAACAAACAAGTTTACTGC

Basic information

species Glycine max
transcript GLYMA02G41890.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963355|gb|BM270105.1|BM270105
EST:     CAAAGTTTGTGATGTCAAACAAGATGTGATGGTTGGCACATCACTGTCAA                         ATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTT
genomic: CAAAGTTTGTGATGTCAAACAAGATGTGATGGTTGGCACATCACTGTCAAgtaattaacc ... tccggtacagATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTT
EST: gi|6913619|gb|AW395149.1|AW395149
EST:     CAAAGTTTGTGATGTCAAACAAGATGTGATGGTTGGCACATCACTGTCAA                         ATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTT
genomic: CAAAGTTTGTGATGTCAAACAAGATGTGATGGTTGGCACATCACTGTCAAgtaattaacc ... tccggtacagATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtgtgttaattattaacttgttctttcctcttttttatctactccggtacagATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTTAAGTTCTATCTATTCTGAGGTGATGATGATGAACAAACAAGTTTACTGC
             tattaac  putative branch site (score: 1)
                   cttgttctttcctctt  CT-rich tract
        ttaattattaacttgt  TA-rich tract