1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgttattctccaatcaaaactaaagtttcgcttcatcactcagctgttgtgtgttaattattaacttgttctttcctcttttttatctactccggtacagATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTTAAGTTCTATCTATTCTGAGGTGATGATGATGAACAAACAAGTTTACTGC
species | Glycine max |
transcript | GLYMA02G41890.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCAAACAAGATGTGATGGTTGGCACATCACTGTCAAGTAATTAACCAAG ATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTTEST: gi|22931469|gb|BU548608.1|BU548608
genomic: GTCAAACAAGATGTGATGGTTGGCACATCACTGTCAAGTAATTAACCAAGgttttgttac ... tccggtacagATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTT
EST: GTCAAACAAGATGTGATGGTTGGCACATCACTGTCAAGTAATTAACCAAG ATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTTEST: gi|193391355|gb|FK355036.1|FK355036
genomic: GTCAAACAAGATGTGATGGTTGGCACATCACTGTCAAGTAATTAACCAAGgttttgttac ... tccggtacagATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTT
EST: GTCAAACAAGATGTGATGGTTGGCACATCACTGTCAAGTAATTAACCAAG ATGTATTCGTGGAGCTAAATTAAAT
genomic: GTCAAACAAGATGTGATGGTTGGCACATCACTGTCAAGTAATTAACCAAGgttttgttac ... tccggtacagATGTATTCGTGGAGCTAAATTAAAT
gttgtgtgttaattattaacttgttctttcctcttttttatctactccggtacagATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTTAAGTTCTATCTATTCTGAGGTGATGATGATGAACAAACAAGTTTACTGC
tattaac putative branch site (score: 1)
cttgttctttcctctt CT-rich tract
ttaattattaacttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttattctccaatcaaaactaaagtttcgcttcatcactcagctgttgtgtgttaattattaacttgttctttcctcttttttatctactccggtacagATGTATTCGTGGAGCTAAATTAAATCCTGAAGATTTAGATTGCATGGTCTTAAGTTCTATCTATTCTGAGGTGATGATGATGAACAAACAAGTTTACTGC
- - - - -ccaatca
- - - - - - - - - - - - - - cgcttca
- - - - - - - - - - - - - - - - - -tcactca
- - - - - - - - - - - - - - - - - - - - - gctgttg