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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatctctagcagctaattgaccagtgggagtgcatgttgaatttagttataagttttctccctactgagaaaaataatagctagttattgtgtatgttttttacttgtggtgcagATGGTATTTTGCTGCTTGAAGTTAATAGGATGCTGAGGGCGGGAGGGTACTTTGTTTGGGCTGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGA

Basic information

species Glycine max
transcript GLYMA02G41770.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41770.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0019g02250.t01 (Vitis vinifera), 3'ss of exon 3
gtatgatctctagcagctaattgaccagtgggagtgcatgttgaatttagttataagttt-tctccctactgagaaaaataatagctagttattgtgtatgttttttacttg-----tggtgcagATGGTATTTTGCTGCTTGAAGTTAATAGGATGCTGAGGGCGGGAGGGTACTTTGTTTGGGCTGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGA
                          || |  || | | | | | || || | |   ||| | |   |  | |    | ||   |  | ||  ||   ||| ||||| |||      || || |||||| || ||||||||||| || ||||| |||||  |||| ||||| ||||||| |||||| || || || |||||||| || || |||    |||||||
-------------------------aagagaaagagaaagctcacttaagatttttttttgtttaattgttaaatttactaggggacactttctgatcatgctttttcctttcattttgatgaagATGGAATCTTGCTGCTTGAGGTAAATAGAATGCTTCGGGCAGGAGGATACTTTGCTTGGGCAGCACAGCCAGTTTATAAGCATGAAGAAAACCTAGAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7478027|gb|AW666108.1|AW666108
EST:     TTTTGACTTGATACATTGTTCACGCTGTAGAATTAATTGGACTCGAGATG                         ATGGTATTTTGCTGCTTGAAGTTAATACGATGCTGAGGGCGGGAGGGTACT
genomic: TTTTGACTTGATACATTGTTCACGCTGTAGAATTAATTGGACTCGAGATGgtatgatctc ... tgtggtgcagATGGTATTTTGCTGCTTGAAGTTAATAGGATGCTGAGGGCGGGAGGGTACT
EST: gi|37997595|gb|CF809184.1|CF809184
EST:     TTTTGACTTGATACATTGTTCACGCTGTAGAATTAATTGGACTCGAGATG                         ATGGTATTTTGCTGCTTGAAGTTAATAGGATGCTGAGGGCGGGAGGGTACT
genomic: TTTTGACTTGATACATTGTTCACGCTGTAGAATTAATTGGACTCGAGATGgtatgatctc ... tgtggtgcagATGGTATTTTGCTGCTTGAAGTTAATAGGATGCTGAGGGCGGGAGGGTACT
EST: gi|192298288|gb|FG991736.1|FG991736
EST:     TTTTGACTTGATACATTGTTCACGCTGTAGAATTAATTGGACTCGAGATG                         ATGGTATTTTGCTGCTTGAAGTTAATAGGATGCTGAGGGCGGGAGGGTACT
genomic: TTTTGACTTGATACATTGTTCACGCTGTAGAATTAATTGGACTCGAGATGgtatgatctc ... tgtggtgcagATGGTATTTTGCTGCTTGAAGTTAATAGGATGCTGAGGGCGGGAGGGTACT
EST: gi|15287979|gb|BI471870.1|BI471870
EST:     TTTGACTTGATACATTGTTCACGCTGTAGA-TTAAATTGGACTCGAGATG                         ATGGTATTTTGCTGCTTGA
genomic: TTTGACTTGATACATTGTTCACGCTGTAGAATTAA-TTGGACTCGAGATGgtatgatctc ... tgtggtgcagATGGTATTTTGCTGCTTGA
EST: gi|151400792|gb|EV270606.1|EV270606
EST:     GTTCACGCTGTAGAATTAATTGGACTCGAGATG                         ATGGTATTTTGCTGCTTGGAGTTAATAGGATGCTGAGGGCGGGAGGGTACT
genomic: GTTCACGCTGTAGAATTAATTGGACTCGAGATGgtatgatctc ... tgtggtgcagATGGTATTTTGCTGCTTGAAGTTAATAGGATGCTGAGGGCGGGAGGGTACT
EST: gi|15287021|gb|BI470912.1|BI470912
EST:     ATTGGACTCGAGATG                         ATGGTATTTTGCTGCTTGAAGTTAATAGGATGCTGAGGGCGGGAGGGTACT
genomic: ATTGGACTCGAGATGgtatgatctc ... tgtggtgcagATGGTATTTTGCTGCTTGAAGTTAATAGGATGCTGAGGGCGGGAGGGTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctactgagaaaaataatagctagttattgtgtatgttttttacttgtggtgcagATGGTATTTTGCTGCTTGAAGTTAATAGGATGCTGAGGGCGGGAGGGTACTTTGTTTGGGCTGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGA
                                    ttttttactt  CT-rich tract
     tgagaaaaataata  TA-rich tract