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...tagagatatatgttagaaagagtgtactagagagtgttactagcgctcctctgatataaaaaataagtcattgagcttaaataattctgctcttatgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGAAAAAGCAGTGGAAA
species | Glycine max |
transcript | GLYMA02G40840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAG GTTTGCTGGGAGAAATTTGEST: gi|207702174|gb|GD682047.1|GD682047
genomic: AAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGgtacacacac ... tcttatgaagGTTTGCTGGGAGAAATTTG
EST: AAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAG GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTGEST: gi|16277122|gb|BI942215.1|BI942215
genomic: AAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGgtacacacac ... tcttatgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTG
EST: AAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAG GTNTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAAGTGEST: gi|213608150|gb|DB963052.1|DB963052
genomic: AAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGgtacacacac ... tcttatgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTG
EST: AAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAG GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAG
genomic: AAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGgtacacacac ... tcttatgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAG
ctcctctgatataaaaaataagtcattgagcttaaataattctgctcttatgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGAAAAAGCAGTGGAAA
ctctgat putative branch site (score: 4)
ttctgctctt putative PPT
tgatataaaaaataag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagagatatatgttagaaagagtgtactagagagtgttactagcgctcctctgatataaaaaataagtcattgagcttaaataattctgctcttatgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGAAAAAGCAGTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - agtgtac
- - - - - - - - - - - - - - - -gagtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attctgc