Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattttaggagtaaattaaatagtcagtttctttgcaagttggaactttgggttattttatttatttctaatcaattcaattaaatggacattataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGCTATTGACCACATTTTGGATGCCCAGAGAAAAGGCGAGATCAACGAAGAC

Basic information

species Glycine max
transcript GLYMA02G40290.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098189|gb|HO761360.1|HO761360
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|20812136|gb|BQ296614.1|BQ296614
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|151399523|gb|EV269394.1|EV269394
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGTGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|17400108|gb|BM176890.1|BM176890
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|16348047|gb|BI973642.1|BI973642
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGGAACTTAAATGCG
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATG-AACTTAAATGCG
EST: gi|22522132|gb|BU080943.1|BU080943
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|21888481|gb|BQ741694.1|BQ741694
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|120530426|gb|EH258559.1|EH258559
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|11412123|gb|BF424134.1|BF424134
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|17998747|gb|BI119557.1|BI119557
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|10846630|gb|BF069466.1|BF069466
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|6455309|gb|AW185992.1|AW185992
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|15285087|gb|BI468978.1|BI468978
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|7458639|gb|AW666089.1|AW666089
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAAAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|6481577|gb|AW200848.1|AW200848
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|21637861|gb|BM108016.1|BM108016
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGANAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|192307600|gb|FG999639.1|FG999639
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|33388383|gb|CA851590.1|CA851590
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|18735017|gb|BM528516.1|BM528516
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|17152909|gb|BM142842.1|BM142842
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|16348148|gb|BI973743.1|BI973743
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|19346418|gb|BM891298.1|BM891298
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|16348951|gb|BI974546.1|BI974546
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|16349325|gb|BI974920.1|BI974920
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|38191427|gb|CF920633.1|CF920633
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|151402119|gb|EV271932.1|EV271932
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|14258610|gb|BG881518.1|BG881518
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|19453047|gb|BM954457.1|BM954457
EST:     AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
EST: gi|5058051|gb|AI736527.1|AI736527
EST:     AAGGAGACGAGGGTGGAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAA                         GAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC
genomic: AAGGAGACGAGGTTGAAGCTTTTCAAGGATTACTTCGTTGACGAGAGGAAgtaagttttt ... attataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgggttattttatttatttctaatcaattcaattaaatggacattataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGCTATTGACCACATTTTGGATGCCCAGAGAAAAGGCGAGATCAACGAAGAC
                    ttctaat  putative branch site (score: 2)
       ttattttatttatttc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aattttaggagtaaattaaatagtcagtttctttgcaagttggaactttgggttattttatttatttctaatcaattcaattaaatggacattataacagGAAGCTTGGAAGCACCAAGAGCACCAACAACAATAATGAACTTAAATGCGCTATTGACCACATTTTGGATGCCCAGAGAAAAGGCGAGATCAACGAAGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA