Sequence
atgc intronic sequence ATGC exonic sequence...ttataatataggagtagatttggcctgttattcaccgtctacattatacttcgatataaatttgattcatcactagtttcccttgatgttatcatcacagTTTGAAGTCTACTATAGTGCCATTGTTCGAGAAGGTATTGAGTGCCAGCGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGCGCTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G40280.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G158162_T03 (Zea mays), 3'ss of exon 4
-----------------------------------------------------------------------------------------ttataatataggagtagatttggcctgttatt-caccgtctacattatactt-cgatataaatttgattcatcactagtttcccttgatgttatcatcacagTTTGAAGTCTACTATAGTGCCATTGTTCGAGAAGGTATTGAGTGCCAGCGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGCGCTGAG
|| |||| | ||| || | |||| | | | | | ||| | | | || | || || | | | |||||| ||| | |||| || || || || || ||||||||||||||||| ||||||| || |||||||| || || || || |||||||| |||||| |||| || |||
gtatccttgataaggtctccatacatttgaaactgtgaacttcctggtgacattgatctcagacatttagtaacttatacatcaaggctctagaatagctcattaggcttaaacccttataatatgatgcataaatttcttgtgtaacagatatagtttttcttttatcttccttgactatattttgcaagTTCAAATTCCACAATCGTTCCATTGTTCGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAG
upper sequence: GLYMA02G40280.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g08100.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------ttataat-ataggagtagatttggcctgttattcaccgtctacattatacttcgat-ataaatttgattcatcactagtttcccttgatgttatcatcacagTTTGAAGTCTACTATAGTGCCATTGTTCGAGAAGGTATTGAGTGCCAGCGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGCGCTGAG
| || || || | |||| | | | | | || || | | | || | | || ||| ||| | | | | | |||||||| ||| |||||||| || || || |||||||| ||||||||||| ||||||| || ||||| |||||||||||||| | || ||||||||| | || |||||
gtatccataaatatttcatactttaatttttaagttgattatcatcataatagaatgtgattttatgtaacattcaatgtgttggtttgttcattgattcaattaagtgtttaccttacat-atgttatcttca-agTTTGAATTCCACCATTGTGCCATTATTCGAGAAGGTTCTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTCCTCCCAAAAGCATGTGCTGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atacttcgatataaatttgattcatcactagtttcccttgatgttatcatcacagTTTGAAGTCTACTATAGTGCCATTGTTCGAGAAGGTATTGAGTGCCAGCGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGCGCTGAG
tcccttgat putative branch site
atataaatttgattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttataatataggagtagatttggcctgttattcaccgtctacattatacttcgatataaatttgattcatcactagtttcccttgatgttatcatcacagTTTGAAGTCTACTATAGTGCCATTGTTCGAGAAGGTATTGAGTGCCAGCGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGCGCTGAG
- - - - - - - - - - -ggcctgt
- - - - - - - - - - - - - - - - caccgtc