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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgattaattgcttctcctatagttgttcttgattcaattacattttatttatttggtaggtccaagaaaaaagggaatctttatgcttcctgaggctgttcttgaacatggctcttttttatgtgtcattatcttagTTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTG

Basic information

species Glycine max
transcript GLYMA02G39230.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014509|gb|CX701251.1|CX701251
EST:     ACCATCAAACCCATGGACACATTGAGAAGGATGAGTCATGGGTTCCA                         TTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
genomic: ACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCAgtatgtgatt ... attatcttagTTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
EST: gi|151393687|gb|EV263562.1|EV263562
EST:     CTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCA                         TTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
genomic: CTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCAgtatgtgatt ... attatcttagTTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
EST: gi|151407473|gb|EV277288.1|EV277288
EST:     CTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCA                         TTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
genomic: CTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCAgtatgtgatt ... attatcttagTTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
EST: gi|192305128|gb|FG994678.1|FG994678
EST:     CTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCA                         TTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
genomic: CTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCAgtatgtgatt ... attatcttagTTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
EST: gi|46492770|gb|CN472326.1|CN472326
EST:     CTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCA                         TTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
genomic: CTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCAgtatgtgatt ... attatcttagTTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
EST: gi|151394272|gb|EV264143.1|EV264143
EST:     CTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCA                         TTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
genomic: CTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCAgtatgtgatt ... attatcttagTTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
EST: gi|213600296|gb|DB955878.1|DB955878
EST:     CTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCA                         TTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA
genomic: CTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCAgtatgtgatt ... attatcttagTTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcttcctgaggctgttcttgaacatggctcttttttatgtgtcattatcttagTTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTG
                                              ttatctt  CT-rich tract
                              tcttttttat  TA-rich tract