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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgactgctcaatctttttaatatcacaaagaagtagttatttggaaaacatgtaataaacttattcttaaagctgtgccaagtgcttgtatttttggctctcattctttctctctgaacactttcgtgtatatgaatcttgaagtggtccttttaaatctctggatttatcgtgttattgttgccctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGAAACTGCTGAACAGATGTATCAGTCACTTAATGTAACACTAGCTTCATTACCAAAGTCAACTCGAGTAT

Basic information

species Glycine max
transcript GLYMA02G38460.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G38460.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G10850.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagatgactgctcaatctttttaatatcacaaagaagtagttatttggaaaacatgtaataaacttattcttaaagctgtgccaagtgct-tgtatttttggctctcattctttctctctgaacactttcgtgtatatgaatcttgaagtggtccttttaaatctctggatttatcgtgttattgttgccctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGAAACTGCTGAACAGATGTATCAGTCACTTAATGTAACACTAGCTTCATTACCAAAGTCAACTCGAGTAT
                                      |||  |  |   |  |     |||   ||| |||||    |  | ||| |  |  | ||| ||   |    ||  ||| |||||| | |  |     |  |   |  |   |||    | || |     |||  ||||   || | || |      ||||||| ||||| | |||||||| ||||||||||  || ||||| ||||||||||||||  |   ||| || || ||| ||||||| ||  | || |  || |
--------------------------------------gtaagtggtaacattaagctgaatcctcttgttctt----ccctaccatggaccctatatgttctccgtagatcttttatctctgtaaatgtctaaatggagatagttatgagttaaacattaag----ctgtgtttactttgattttat------acagTTTGTTGCTGGATGTGGGAAGTTTTTTGAAGGGACAGCTGAGCAGATGTATCAGTCGTTGTGTGTGACTCTGGCTGCATTACCTAAACCGACACAGGTTT

upper sequence: GLYMA02G38460.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0067g00180.t01 (Vitis vinifera), 3'ss of exon 4
gtaagatgactgctcaatctttttaatatcacaaagaagtagttatttggaaaacatgtaataaacttattcttaaagctgtgccaagtgcttgtatttttggctctcattctttctctctgaacactttcgtgtatatgaatcttgaagtggtccttttaaatctctggatttatcgtgttattgttgccctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGAAACTGCTGAACAGATGTATCAGTCACTTAATGTAACACTAGCTTCATTACCAAAGTCAACTCGAGTAT
                                                                                               ||   ||| || | ||  ||     | || |  ||  | | | |  |  |   |||     | |||||    |    |  | ||    |  |     | |||||| ||||| |||||||||||||||||||||  || || |||||||||||||| || ||   ||||||| | || ||||| |||||| ||||| ||||||
----------------------------------------------------------------------------------------------aatgactggatccctttactttgtaataaa-atcttgttcttttttgacttgctagttacgatgttaaacagttaa--tagtggttacttcatgcatgtgcagTTTGTTGCTGGTTGTGGGAAATTTTTTGAAGGCACAGCAGAACAGATGTATCAATCGCTATGTGTAACATTGGCCTCATTGCCAAAGCCAACTAGAGTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgaagtggtccttttaaatctctggatttatcgtgttattgttgccctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGAAACTGCTGAACAGATGTATCAGTCACTTAATGTAACACTAGCTTCATTACCAAAGTCAACTCGAGTAT
                                            ttgccct  CT-rich tract
              ttttaaatct  TA-rich tract