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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatccaagtttcattgtagtagagtgctttgctttgaagtttggattgataaatagcgtttccgattttatgcataattgttgtttatggaagtttattttgtacggaatgcgtagGGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTG

Basic information

species Glycine max
transcript GLYMA02G38160.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G38160.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 3
gtgaatccaagtttcattgtagtagagtgctttgctttgaa-gtttggattgataaatagcgtttccgattttatgcataattgttgtttatggaagtttattttgtacggaatgcgtagGGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTG
                  |||  |      |||  |  ||| | |   ||| | | |||        ||   | ||   | || ||| || |||  | | || ||     |  |    |||| || ||||||||||| || ||||||||||| || || || ||||||||||||||||| || || ||||| ||||| || || |||||||| || || |
------------------gtatcaacaaaatttagtgagaatgatcaaattcacatata------tagaagctttg---atttattgatt-tgggggatgatgttacg-agttttttcagGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAG

upper sequence: GLYMA02G38160.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 3'ss of exon 3
gtgaatccaagtttcattgtagtagagtgctttgctttgaagtttggattgataaatagcgtttccgattttatgcataattgttgtttatggaagtttattttgtacggaatgcgtagGGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTG
           | |  |      ||| |  ||||   | |   || |   ||  | |   |  |  ||||| | || ||  |   | || | ||| |  ||||| |         |||||| || ||||| || ||||| || |||||||| ||| | || || ||||||||||||||||| || ||||| |||||||| || ||||| ||||| ||||
-----------tgttttgagttcagaattttttgggatcaccatttg-cagaggactgtggactttgatttgaagcttacattacgatt-ttgaattgaattttttg------atgtagGGATTGGAACTCATTCCTTCAGAAAATTTCACATCGGTATCTGTAATGCAAGCCGTTGGATCAGTCATGACTAATAAATATAGTGAAGGGTATCCTGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814712|gb|BI786987.1|BI786987
EST:     ATCCCGAGATCGCTGACATAATCGAACTCGAAAAAGCGCGTCAATGGAAG                         GGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAA
genomic: ATCCCGAGATCGCTGACATAATCGAACTCGAAAAAGCGCGTCAATGGAAGgtgaatccaa ... gaatgcgtagGGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAA
EST: gi|24205505|gb|BU964758.1|BU964758
EST:     ATCCCGAGATCGCTGACATAATCGAACTCGAAAAAGCGCGTCAATGGAAG                         GGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAA
genomic: ATCCCGAGATCGCTGACATAATCGAACTCGAAAAAGCGCGTCAATGGAAGgtgaatccaa ... gaatgcgtagGGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAA
EST: gi|6566248|gb|AW233929.1|AW233929
EST:     ATCCCGAGATCGCTGACATAATCGAACTCGAAAAAGCGCGTCAATGGAAG                         GGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAA
genomic: ATCCCGAGATCGCTGACATAATCGAACTCGAAAAAGCGCGTCAATGGAAGgtgaatccaa ... gaatgcgtagGGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgattttatgcataattgttgtttatggaagtttattttgtacggaatgcgtagGGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTG
            ataattgttgtttat  TA-rich tract