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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgattagggcatcacgctattttcctaatacttagtgtagcactgccaaattcttggtcactaagattactctaatctctcgttttctctataatgcagACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAG

Basic information

species Glycine max
transcript GLYMA02G36960.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295491|gb|FG987105.1|FG987105
EST:     GAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAG                         ACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCT
genomic: GAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAGgtcaaacctc ... tataatgcagACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCT
EST: gi|15284959|gb|BI468850.1|BI468850
EST:     GAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAG                         ACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCT
genomic: GAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAGgtcaaacctc ... tataatgcagACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCT
EST: gi|207690947|gb|GD671569.1|GD671569
EST:     GAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAG                         ACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCT
genomic: GAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAGgtcaaacctc ... tataatgcagACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCT
EST: gi|193438789|gb|FK407078.1|FK407078
EST:     GAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAG                         ACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCT
genomic: GAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAGgtcaaacctc ... tataatgcagACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCT
EST: gi|193493227|gb|FK460033.1|FK460033
EST:     TTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAG                         ACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCT
genomic: TTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAGgtcaaacctc ... tataatgcagACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccaaattcttggtcactaagattactctaatctctcgttttctctataatgcagACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAG
                         ctctaat  putative branch site (score: 3)
 ctctaatctctcgttt  CT-rich tract
 taagatta  TA-rich tract