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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatatgacactttgaatgtatatgatatgatatattgttcctagttcttgcagttgtttggctggcagttggacaatttcatatctgttagggaattgtgcttctctaaaattgatctgtgcttgatgatttgtttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCCACCTACAGTGATGTTTTCACTGCTAAAATATTAAATTCTGAGCAATGTGCAGAATTGAAAATGGG

Basic information

species Glycine max
transcript GLYMA02G36530.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G36530.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 3
gttcatatgacactttgaatgtatatgatatgatatattgttcctagttcttgcagttgtttggctggcagttggacaatttcatatctgttagggaattgtgcttctctaaaattgatctgtgcttgatgatttgtttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCCACCTACAGTGATGTTTTCACTGCTAAAATATTAAATTCTGAGCAATGTGCAGAATTGAAAATGGG
                                     ||||   | |   |   |     ||   || |  || | |  || | | ||||| |    ||| |     |||||   | |  |||  || ||| |     |||||||||||| || |||||||||||  | || ||||||||| | |||||||||||  |  | || ||||| ||  || | ||||||||    ||| ||||||||||
-------------------------------------ttgtctattgcaataatatgatcttttttgcctttttgtctgttcc-tgtctgtca----attctagaattctaactgttaattgtcatttatgtta----tacctcagGGGTATTAGCAGAAGAGGCTTCAAAAATTGCTTCCGCATACAGTGATGTCCTTTCAGCAAAAATTTTGGATGCAGAGCAATGCAAGGAACTGAAAATGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120496872|gb|EH225039.1|EH225039
EST:     TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAG                         GGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCCACCTACAGTGATGTTT
genomic: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGgttcatatga ... tttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCCACCTACAGTGATGTTT
EST: gi|120496798|gb|EH224965.1|EH224965
EST:     TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAG                         GGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCCACCTACAGTGATGTTT
genomic: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGgttcatatga ... tttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCCACCTACAGTGATGTTT
EST: gi|193343372|gb|FK308178.1|FK308178
EST:     TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAG                         GGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCCACCTACAGTGATGTTT
genomic: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGgttcatatga ... tttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCCACCTACAGTGATGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagggaattgtgcttctctaaaattgatctgtgcttgatgatttgtttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCCACCTACAGTGATGTTTTCACTGCTAAAATATTAAATTCTGAGCAATGTGCAGAATTGAAAATGGG
                                             tttacctc  CT-rich tract
                  taaaattgat  TA-rich tract