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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacacttctcatgtttatgattatgagaaaattcagtccgttttattggcttaataactaattatctgtgtgacaagatttatagacttgaatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACCATGGAGGACATACTGACCCAGCTGAAGAAGGAAATGGCCGCTCCTCATA

Basic information

species Glycine max
transcript GLYMA02G35990.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35990.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g02580.t01 (Vitis vinifera), 3'ss of exon 3
gacacttctcatgtttatgatta--tgagaaaattcagtccgttttattggcttaataactaattatctgtgtgacaagatttat--agacttgaatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACCATGGAGGACATACTGACCCAGCTGAAGAAGGAAATGGCCGCTCCTCATA
|||  ||      |  ||  |||  |     ||     || | ||||| || |  |||| | | |   || |||||||| | |     ||      ||  |||||| ||||| ||||| |||||  |||| |||||||||||  | ||||||||||||||||| |||||||| |||||||||||||| ||||| || || || |
gacgatttgtgaataaatagttaaattcaggaacaagatctgatttat-ggatggataattgaat---tgggtgacaaggtctgatgggatccatttgttacagGTGGAACCTAAGAAGTTTGGAATTCTGGCAAATTGGCAGCGGGAGTACACCATGGAGGATATACTGACACAGCTGAAGAAGGAGATGGCTGCGCCACAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287430|gb|BI471321.1|BI471321
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|18040006|gb|BM308300.1|BM308300
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254349094|gb|GR860366.1|GR860366
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|4307444|gb|AI444048.1|AI444048
EST:     GTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACCTGGAGTG                         -TTGAACCAAAGAAATTTG-TCTTCTT
genomic: GTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAAC-TGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTT
EST: gi|21675327|gb|BQ627688.1|BQ627688
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|22932167|gb|BU549306.1|BU549306
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAANNNGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|27426798|gb|CA938318.1|CA938318
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|19348365|gb|BM892897.1|BM892897
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|58018614|gb|CX705356.1|CX705356
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254316764|gb|GR828301.1|GR828301
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|192315990|gb|FK007109.1|FK007109
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|27425018|gb|CA936538.1|CA936538
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|12688734|gb|BG155070.1|BG155070
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254327956|gb|GR834921.1|GR834921
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|15813071|gb|BI785346.1|BI785346
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|13480511|gb|BG509854.1|BG509854
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|21994159|gb|BQ785687.1|BQ785687
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|14258514|gb|BG881422.1|BG881422
EST:     GGCTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTGGGTCTTCTTGCAAATTGGCAAATACAGTCCACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|4396099|gb|AI495096.1|AI495096
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGC
EST: gi|58024425|gb|CX711166.1|CX711166
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|31460525|gb|CD402493.1|CD402493
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|12497027|gb|BG047360.1|BG047360
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATNTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|6455149|gb|AW185832.1|AW185832
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAGATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|16341891|gb|BI967486.1|BI967486
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|15286664|gb|BI470555.1|BI470555
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254349093|gb|GR860365.1|GR860365
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|15286444|gb|BI470343.1|BI470343
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|6341954|gb|AW164778.1|AW164778
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|21286090|gb|BQ473961.1|BQ473961
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|15814040|gb|BI786315.1|BI786315
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254343063|gb|GR859225.1|GR859225
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|23725959|gb|BU760954.1|BU760954
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|193437905|gb|FK399194.1|FK399194
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAG
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAG
EST: gi|12773143|gb|BG238070.1|BG238070
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254327955|gb|GR834920.1|GR834920
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254316765|gb|GR828302.1|GR828302
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|192315989|gb|FK007108.1|FK007108
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|9258943|gb|BE347090.1|BE347090
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|58018289|gb|CX705031.1|CX705031
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|213611874|gb|DB958912.1|DB958912
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|31455911|gb|CD397939.1|CD397939
EST:     GAAACTGGAGTG                         GTTGAACCCAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254329681|gb|GR839234.1|GR839234
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcttaataactaattatctgtgtgacaagatttatagacttgaatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACCATGGAGGACATACTGACCCAGCTGAAGAAGGAAATGGCCGCTCCTCATA
     ttaataactaattatc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gacacttctcatgtttatgattatgagaaaattcagtccgttttattggcttaataactaattatctgtgtgacaagatttatagacttgaatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACCATGGAGGACATACTGACCCAGCTGAAGAAGGAAATGGCCGCTCCTCATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtga