Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgttaatcaaaagcaagtaaaatattttgaaaaaaatagcgttttcttattttaatccttcctttctgctatataaaaaaaatcatattgcatgacagGGTTCCCGAGATTATTTTCTGGCACATTCCAAGTACAGCTTATAAGGTGGTGGCCCCCAAGTTTGGCATACCAAAGCCTTGCGTAGGATCAATCAACAAG

Basic information

species Glycine max
transcript GLYMA02G34830.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336400|gb|CO980266.1|CO980266
EST:     CAGGTAGAATGGTTTCGGCAGAAAGCTGAAGAAGTTAACCCTGACTCAAG                         GGTTCCCGAGATTATTTTCTGGCACATTCCAAGTACAGCTTATAAGGTGGT
genomic: CAGGTAGAATGGTTTCGGCAGAAAGCTGAAGAAGTTAACCCTGACTCAAGgtagaatgag ... tgcatgacagGGTTCCCGAGATTATTTTCTGGCACATTCCAAGTACAGCTTATAAGGTGGT
EST: gi|51336150|gb|CO980016.1|CO980016
EST:     CAGGTAGAATGGTTTCGGCAGAAAGCTGAAGAAGTTAACCCTGACTCAAG                         GGTTCCCGAGATTATTTTCTGGCACATTCCAAGTACAGCTTATAAGGTGGT
genomic: CAGGTAGAATGGTTTCGGCAGAAAGCTGAAGAAGTTAACCCTGACTCAAGgtagaatgag ... tgcatgacagGGTTCCCGAGATTATTTTCTGGCACATTCCAAGTACAGCTTATAAGGTGGT
EST: gi|9819407|gb|BE554920.1|BE554920
EST:     CAGGTAGAATGGTTTCGGCAGAAAGCTGAAGAAGTTAACCCTGACTCAAG                         GGTTCCCGAGATTATTTTCTGGCACATTCCAAGTACAGCTTATAAGGTGGT
genomic: CAGGTAGAATGGTTTCGGCAGAAAGCTGAAGAAGTTAACCCTGACTCAAGgtagaatgag ... tgcatgacagGGTTCCCGAGATTATTTTCTGGCACATTCCAAGTACAGCTTATAAGGTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttattttaatccttcctttctgctatataaaaaaaatcatattgcatgacagGGTTCCCGAGATTATTTTCTGGCACATTCCAAGTACAGCTTATAAGGTGGTGGCCCCCAAGTTTGGCATACCAAAGCCTTGCGTAGGATCAATCAACAAG
      ttttaat  putative branch site (score: 3)
                   tttctgctatataaaa  TA-rich tract