1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttgttcttgtttgtcagttgatctttggagtagatgcatgttcttgtttgtcagttgatctttggagtagatgcatgttcttgtttgttatgcttaatatattaatatagactggtgaacttcgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAA
species | Glycine max |
transcript | GLYMA02G33770.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACATTGCTCTTGAAGAGCTCAATCGCTTGGAGGAAATCATTGATTCAAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATEST: gi|209708048|gb|BW657090.1|BW657090
genomic: ACATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATCATTGATTCAAAGgttgttcttg ... ttcgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: ACATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATCATTGATTCGAAG AATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATEST: gi|151408544|gb|EV278352.1|EV278352
genomic: ACATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATCATTGATTCAAAGgttgttcttg ... ttcgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
EST: ACATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATCATTGATTCAAAG AATTTTGCACCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
genomic: ACATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATCATTGATTCAAAGgttgttcttg ... ttcgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCAT
tgttcttgtttgttatgcttaatatattaatatagactggtgaacttcgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAA
tattaat putative branch site (score: 2)
cttcgtt putative PPT
ttgtttgttatgctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgttcttgtttgtcagttgatctttggagtagatgcatgttcttgtttgtcagttgatctttggagtagatgcatgttcttgtttgttatgcttaatatattaatatagactggtgaacttcgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA