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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtgatatcattgtaagtactgtgattttcaatagtcattcacgatgcctgtctttcttatgtgcttaacatggtttcagGTTATGGCGCGATCCTTACCTCTTGACAAGCATACCTTGGTAACCCATTTGAGGAAGATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATG

Basic information

species Glycine max
transcript GLYMA02G32780.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208330452|gb|GE131277.1|GE131277
EST:     TTCAGGACTTGTCTATAGATCAAATGAAGAGTATTATACCAAGAATTCAG                         GTTATGGCGCGATCCTTACCTCTTGACAAGCATACCTTGG
genomic: TTCAGGACTTGTCTATAGAGCAAATGAAGAGTATTATACCAAGAATTCAGgttgtgatat ... atggtttcagGTTATGGCGCGATCCTTACCTCTTGACAAGCATACCTTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcaatagtcattcacgatgcctgtctttcttatgtgcttaacatggtttcagGTTATGGCGCGATCCTTACCTCTTGACAAGCATACCTTGGTAACCCATTTGAGGAAGATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATG
                                      gcttaac  putative branch site (score: 3)
                            tttcttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttgtgatatcattgtaagtactgtgattttcaatagtcattcacgatgcctgtctttcttatgtgcttaacatggtttcagGTTATGGCGCGATCCTTACCTCTTGACAAGCATACCTTGGTAACCCATTTGAGGAAGATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA