1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taaacccaaggaaaatgttttgagtgagctgtcactcaatcatgtccttttactattatacctctctattttaactttaactaatgctttgaaaatttagGTCCGCCGCACTGATGTTCTTTCTGCCTGGAGTGGCATTCGCCCATTAGCGATGGACCCAACAGCTAAAAATACCGAGAGTATCTCCAGGGATCATGTTG
species | Glycine max |
transcript | GLYMA02G28000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAA GTCCGCCGCACTGATGTTCTTTCTGCCTGGAGTGGCATTCGCCCATTAGCGEST: gi|7691586|gb|AW759711.1|AW759711
genomic: AAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAAgtatgatatt ... gaaaatttagGTCCGCCGCACTGATGTTCTTTCTGCCTGGAGTGGCATTCGCCCATTAGCG
EST: ATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAA GTCCGCCGCACTGATGTTCTTTCTGCCTGGAGTGGCATTCGCCCATTAACGEST: gi|151403213|gb|EV273023.1|EV273023
genomic: ATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAAgtatgatatt ... gaaaatttagGTCCGCCGCACTGATGTTCTTTCTGCCTGGAGTGGCATTCGCCCATTAGCG
EST: ATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAA GTCCGCCGCACTGATGTTCTTTCTGCCTGGAGTGGCATTCGCCCATTAGCGEST: gi|10844622|gb|BF067792.1|BF067792
genomic: ATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAAgtatgatatt ... gaaaatttagGTCCGCCGCACTGATGTTCTTTCTGCCTGGAGTGGCATTCGCCCATTAGCG
EST: ATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAA GTCCGCCGCACTGATGTTCTTTCTGCCTGGAGTGGCATTCGCCCATTAGCG
genomic: ATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAAgtatgatatt ... gaaaatttagGTCCGCCGCACTGATGTTCTTTCTGCCTGGAGTGGCATTCGCCCATTAGCG
ccttttactattatacctctctattttaactttaactaatgctttgaaaatttagGTCCGCCGCACTGATGTTCTTTCTGCCTGGAGTGGCATTCGCCCATTAGCGATGGACCCAACAGCTAAAAATACCGAGAGTATCTCCAGGGATCATGTTG
aactaat putative branch site (score: 2)
tctattttaactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaacccaaggaaaatgttttgagtgagctgtcactcaatcatgtccttttactattatacctctctattttaactttaactaatgctttgaaaatttagGTCCGCCGCACTGATGTTCTTTCTGCCTGGAGTGGCATTCGCCCATTAGCGATGGACCCAACAGCTAAAAATACCGAGAGTATCTCCAGGGATCATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- aacccaa
- - - - - - - - - - tgagtga
- - - - - - - - - - - - - - - -tcactca
- - - - - - - - - - - - - - - - - - - - catgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaatgc