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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttaatatttagttggtattgtttcacatacttttgagctgacatctcacctttttctttcctccaatctctgcaaaatctatattacattctctgtctatctttccagTGTTGTCACTTGATCCAGTCGTTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAA

Basic information

species Glycine max
transcript GLYMA02G26390.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G26390.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G44170.3 (Arabidopsis thaliana), 3'ss of exon 3
gtatgttaatatttagttggtattgtttcacatacttttgagctgacatctcacctttttctttcctccaatctctgcaaaatctatattacattctctgtctatctttccagTGTTGTCACTTGATCCAGTCGTTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAA
                   |||| ||| |    |||       | |  | | ||  |    | |  | || | | |   ||     | | ||| | | | | | | || | |||||||||  ||||||| ||  |||| || ||| | ||||| ||||||||||||||||| ||||||||| | ||||| ||  | ||| | |||||  | ||
-------------------gtat-gttccgatcact----gattaagttttaactataagttatattacattttgtatgaa----gtgtgacacttttttttttttttgcaagTGTTGTCTATTGATCCTGTTATTGGTGCAATTTCTGCTGGGAATGCTGTTGTTTTAAAGCCATCAGAATTGGCTCCAGCTTCGTCAGCTCTGCTCACTAA

upper sequence: GLYMA02G26390.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g02440.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttaatatttagttggtattgtttcacatacttttgagctgacatctcacctttttctttcctccaatctctgcaaaatctatattacattctctgtctatctttccagTGTTGTCACTTGATCCAGTCGTTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAA
  | |||| |||   | | | |   |||   ||   ||| || ||      ||   ||   |||    ||||       || | ||| ||  |   ||| |||   || ||||||||  | |||||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||| ||  ||||||||| || ||| || | || ||
-caagttattatcgtgattg-accattttgaatctctttaagttgtatggacaggattcaatttttagcaat-------aattttat-ttgtacaatctctct---ttcccagTGTTAGCTCTTGATCCAGCCATTGGAGCTATTGCAGCTGGTAATGCTGTGGTTTTGAAACCATCAGAACTTTGTCCTGCCACTTCCTCATTGATTGCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttcctccaatctctgcaaaatctatattacattctctgtctatctttccagTGTTGTCACTTGATCCAGTCGTTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAA
                                   ttctctgtctatcttt  CT-rich tract
                    aaaatctatattacat  TA-rich tract