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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctctttgttactttctttgggtgtttgttaatttgtgatgccttgcttctgtggtttggtgcctgagtttctgtatgatggtgtttcttttaatcccctttgttcatatcctgctattgtgtttccatgcagACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCGACCAGAGAGTTGG

Basic information

species Glycine max
transcript GLYMA02G25240.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G25240.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G420865_T02 (Zea mays), 3'ss of exon 4
gtaatctctttgttactttctttgggtgtttgttaatttgtgatgccttgcttctgtggtttggtgcctgagtttctgtatgatg-gtgtt-tcttttaatcccctttgttcatatcctg-ctattgtgtttccatgcagACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCGACCAGAGAGTTGG
                                                          || |      |||       ||| ||  ||||  | |||  |     | | | ||||   || ||| | | |||   |  |||||||||| ||  |  | |||   || ||  |  |  | || |||||||||||  | | |||||| ||||| || ||||||||||| |||||||||||||
----------------------------------------------------------gtatctcaaatgaacacacatattatctgtgtggtatttcgaggtagtatatacataggttgactaatctctttaagt-tagACAGCTGCTTTCTCTTTGCCTGTGTTGGAACGTCTACTTTTTCGTCCAAAGCGTGTACCTGCAATTAGGGTGCTTATTCTTACTCCAACCAGAGAGTTGG

upper sequence: GLYMA02G25240.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 3'ss of exon 3
---------------gtaatctctttgttactttctttgggtgtttgttaatttgtga-tgccttgcttctgtggtttggtgc-ctgagtttctgtatgatggtgtttcttttaatcccctttgt-tcatatcctgctattgtgtttccatgcagACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCGACCAGAGAGTTGG
                   |   | ||| | |  || |     | |  || | ||  |  |  ||| || |     | ||    ||||    ||| |   |  | |   | |   | |  |     | ||    ||  ||||    |  |  ||||| ||||| ||| |  ||||||| ||||||||||| |||||||||||||| ||  |||  ||||| ||||||||  |||||||||| |||||||||||||
gtatgttgtgcgtcttgggtgcttgtgtaattgactctata-atgtactactatgaaaacgagttgattttactaatgggcaagctgaaaaactgaaaccttctctagttatcggttctgtgaaaataatgatttgggattgctcctttacacagACGGCTGCCTTTTCCTTACCTACATTAGAGAGGTTATTGTTCCGTCCAAAACGTGTGCAAGCAATCAGGGTCCTTGTTCTTACTCCAACCAGAGAGTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtgtttcttttaatcccctttgttcatatcctgctattgtgtttccatgcagACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCGACCAGAGAGTTGG
          ttttaat  putative branch site (score: 3)
                                          tgtttcc  putative PPT
      tttcttttaat  TA-rich tract