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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttacataattcttgcttatgcttccacttttccctttttgtaatagagaagtgatattttatatgattcttgtgtagGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCAAAGCATTTTGGTGCCAGGCTACTGATTGTCGATTCTCTCTCATTGCCTGGT

Basic information

species Glycine max
transcript GLYMA02G17410.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G17410.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 8
-------------------------------------gtagttacat---aattcttg----------cttatgcttccacttttccctttttgtaatagagaagtgatattttatatg-attcttgtgt-agGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCAAAGCATTTTGGTGCCAGGCTACTGATTGTCGATTCTCTCTCATTGCCTGGT
                                     | ||||| ||     | ||||            | ||| |||  ||||  ||  || |  |||  |  |||| |||   ||| |  | ||  | ||||||||| || |||||||| || |||   |||||||||||||| ||||| ||||| ||||||||  |||| ||||| || |  |||||||| 
gtaccttttatgatctcattgcatatttattgtcttcggagttaaattgaggtccttgaaggtaaggctgtgtgcatcc-ttttttgctgattcttgtaggcatctgatttttctaatgcaaacatgcatcagGTTCGGAGATTTATCAGGAAACATTGATAAAGGCACTTGCAAAACATTTCGGTGCTAGGCTACTTGTTGTTGATTCGCTTTTGTTGCCTGGG

upper sequence: GLYMA02G17410.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 7
--------gtagttacataattcttgcttatgcttccactttt---ccctttttgtaatagagaagtgatattttatatgattcttgtgtagGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCAAAGCATTTTGGTGCCAGGCTACTGATTGTCGATTCTCTCTCATTGCCTGGT
            ||   |   |  ||| | |||||    ||||   |  || ||  | |  | |  | | | |  | |||| |  | | ||||||| |||||||| ||||| ||||||   ||||||||||| || ||||||  |||||| || || ||||| ||||||||   ||||||||||
gtaccaccaccttttttttcatgctgcctgtgctttattttttaatcatttctttgattctatatctaacactcca-atgagttctttatagGTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccacttttccctttttgtaatagagaagtgatattttatatgattcttgtgtagGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCAAAGCATTTTGGTGCCAGGCTACTGATTGTCGATTCTCTCTCATTGCCTGGT
                                            ttcttgt  CT-rich tract
                               atattttatatgattc  TA-rich tract