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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctattcattttcaacttatttagattggtgggcctaaaatgaaattgatcatagttgagaaaatatcttttttttggtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAGGGACAAGCCAGGAGGCACAAGACTTTGCTTGTACAAGATATAAGGCTGA

Basic information

species Glycine max
transcript GLYMA02G16800.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16800.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0104g00320.t01 (Vitis vinifera), 3'ss of exon 3
-------gtatgctattcattttcaacttatttagattggtgggcctaaaatgaaattgatcatagttgagaaaatatc----ttttttttggtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAGGGACAAGCCAGGAGGCACAAGACTTTGCTTGTACAAGATATAAGGCTGA
        | |  |   |||     |   ||||||||| |      |   ||     |   |  | ||     | | |     || | |  |||| |   |||  ||||||| || ||||||||||| || |||||| ||||| ||||||| ||| | ||  || |||||||||| ||||| ||||||||||| ||||||||
atcatcaatttaattgacataagtcatagatttagattag--attttgggatttttcttccctgaatttgctgagtcttgagattatatcgggtgtttccagGTTTTGAGATCTTAGCATTTCCATGCAATCAATTTCTGAAGCAAGAGCCTGGGTCGAGTGAGCAGGCACAAGAATTTGCATGTACAAGATACAAGGCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38192369|gb|CF921575.1|CF921575
EST:     TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGGgtatgctatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|38193656|gb|CF922862.1|CF922862
EST:     TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGGgtatgctatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|192331125|gb|FK020345.1|FK020345
EST:     TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGGgtatgctatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|38193508|gb|CF922714.1|CF922714
EST:     TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGGgtatgctatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|38192642|gb|CF921848.1|CF921848
EST:     TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGGgtatgctatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|38193765|gb|CF922971.1|CF922971
EST:     TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGGgtatgctatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|151408599|gb|EV278407.1|EV278407
EST:     TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGGgtatgctatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|38191657|gb|CF920863.1|CF920863
EST:     GTACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
genomic: GTACAAGAGCAGGGgtatgctatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|7925827|gb|AW831853.1|AW831853
EST:     TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGGgtatgctatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|16344874|gb|BI970469.1|BI970469
EST:     TGCCAATTACANNNNGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGTNNNCAATTNNNGAAGAAAGAGCCAG
genomic: TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGGgtatgctatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|38192866|gb|CF922072.1|CF922072
EST:     TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGGgtatgctatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
EST: gi|38192483|gb|CF921689.1|CF921689
EST:     TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGG                         GACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG
genomic: TGCCAATTACACCCAGTTAACTCAGCTTTACTCCACGTACAAGAGCAGGGgtatgctatt ... gtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctaaaatgaaattgatcatagttgagaaaatatcttttttttggtgatgttagGACTTGAGATATTGGCATTTCCATGTAACCAATTTTTGAAGAAAGAGCCAGGGACAAGCCAGGAGGCACAAGACTTTGCTTGTACAAGATATAAGGCTGA
                       ttgagaaaatatcttt  TA-rich tract