Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatagaaattaccatctttctcgtggatatgcttaattggatataatattttatagtatattttttaatcttttggttcacatcttcagGAATATGGGTTTGGGGAACACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTC

Basic information

species Glycine max
transcript GLYMA02G16130.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 3'ss of exon 4
gtagatagaaattaccatctttctcgtggatatgct---taattggatataatattttatagt--atattttttaatctt-ttggttcacatctt-cagGAATATGGGTTTGGGGAACACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTC
|| || |    ||    |  || |  ||  | |  |   || ||  || |  |  || ||     | |   | ||||| |  | |||||  | || |||| |||||| ||||||| |||||| | ||  |||| ||| ||||   || |   |||||| ||||||||||||| ||||||||||| ||||||||||||||
gtggacatcttttttgcttgttttaatgtctttaatctgtatttctatttgctgattgatgtctaacaagctataatcatacttgttcaattgttacagGTATATGGATTTGGGGTACACCTGTTGAAATGGACATTGATGGTTCAAAAGTGTCTGTCCTTTACCTTGATACTGAAGGATTTGAGAGTGTTGGGAAGTC

upper sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G019361_T01 (Zea mays), 3'ss of exon 4
---------------gtagatagaaattaccatctttctcgtggatatgcttaat-tggatataatattttatagtatattttttaatcttttggttcacatcttcagGAATATGGGTTTGGGGAACACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTC
               |  | |  | |    | | | | |  |   | |  ||  | |  ||| |   | ||| |  || | ||  ||| |||    | | || | |||| || ||| ||||||| || ||| | ||  ||||| || ||||    | |  ||||||| |||| || || || ||||||||||||||||||||||| ||
gttgggttgtttcctgatgttccagaacttcgtttctttgttaattgtcttttttcttaatagagcttatta-ataatttattacaatttttcctattatat-tgcagGTATTTGGATTTGGGGTACTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATC

upper sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 4
-------------gtagatagaa-attaccatctttctcgtggatatgcttaattggatataata----ttttatagtatattttttaatct-tttggttcacatcttcagGAATATGGGTTTGGGGAACACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTC
             ||  | || | | |||||||||||   || ||||   || ||  |  |||||    ||| |   | |  ||   ||||   ||  ||      | |||| || ||||| |||||||||||  ||||  |||| ||| ||||||||| |||||| ||  ||||||| || || || ||||| ||||||||||| |||||
gtatagcaataatgtctagaggacactaccatctttcaactgcatatatatatttctagctaataaaggtttaactttttggttcggaatccacttcattgttgcatacagGTATTTGGGTCTGGGGAACACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTAATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTC

upper sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 4
----------------------gtagatagaaattaccatc--tttctcgtggatatgcttaattggatataatattttatagtatattttttaatcttttggttcacatcttcagGAATATGGGTTTGGGGAACACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTC
                      || |||       ||  |   ||| |  |   | |  | |  ||| | |    ||| ||| | |   || |||| | ||  ||      | |||| |||||||| |||||||| ||||||||  |||||||| |||||||||  | ||||||  ||||| | |||||||| |||||||||||| |||| |||||
gtagaagcagggttaagatattgtggatgtgtgcaactgttgatttttttttttttttttgatgtggctgttgattttgataatgt---ttataatgtgttctttttttcttacagGGATATGGGTGTGGGGAACCCCTATAGAAATGGATATTGATGGAGTAAAGAGTTCTGTGCTTTACTTAGATACAGAGGGATTTGAAAGTATTGGCAAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattggatataatattttatagtatattttttaatcttttggttcacatcttcagGAATATGGGTTTGGGGAACACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTC
                            ttttaat  putative branch site (score: 3)
                                              catcttc  putative PPT
      atataatattttatag  TA-rich tract