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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttatctgttgcattcattcatttgtgtaatgctgctgcatatgccttttatgtctgtttttttttatgctgcagGCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATG

Basic information

species Glycine max
transcript GLYMA02G15330.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G15330.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G171435_T02 (Zea mays), 3'ss of exon 3
-------gttcttatctgttgcattcattcatttgtgtaatgctgctgcatatgcctttta-tgtctgtttttttttatgctgc-agGCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATG
        ||   |  || | |||   |    |||    |    | |   ||| |     | |||  || | | | |||  | | |||| |||| ||||||||||||||| || |||||||| |||||||| ||| |||||
gtttgtgcttgccacttggttcatctttcttcttgacacacctcgttttttatcctaccaaatgtgcgtgtatatatatctttccagGCTCGCTACTTCTTCCAACAACTCATTTCAGGAGTAAGCTACTGCCATTCAATG

upper sequence: GLYMA02G15330.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G081915_T01 (Zea mays), 3'ss of exon 2
--------------------------------------------gttcttatctgttgcattcatt--catttgtgt-aatgctgctgcatatgccttttatgtctgtt-----tttttttatgctgcagGCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATG
                                              |  | |||  |||| | |||   || || |  | | ||||| ||   | ||  |    ||||         ||||    | |||||||| ||||| ||||||||||| |||||||| || |||||||| ||| | |||
gtccgtctttctctcgctatcatcgaccctgcttgcttgctgctcgtgctgtcttgtgcactaattgctatctgcgccactcctgcttcactggactaatcaaactgtcaaagcccctttttcatttcagGCGCGTTTCTTTTTCCAACAACTCATATCAGGGGTCAGCTACTGCCATTCCATG

upper sequence: GLYMA02G15330.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G33950.1 (Arabidopsis thaliana), 3'ss of exon 3
gttcttatctgttgcattcattcatttgtgtaatgct-----gctgcatatgccttttatg-tctgtttttttttatgctgcagGCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATG
||| || ||| ||   ||  ||  ||||   | |  |       |  | ||||      |  | | |  |||  |||  || ||||| | || |||||||| ||||| || ||||||||||| ||||||||||| |||
gttgttctctcttttttttcttgctttgatgattaatcgaagattcaaaatgctgaggctaatatatcgtttactatcatgtagGCGAGGTTTTTCTTCCAGCAACTCATTTCAGGAGTTAGTTACTGTCATGCTATG

upper sequence: GLYMA02G15330.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0063g01080.t01 (Vitis vinifera), 3'ss of exon 3
gttcttatctgttgcattcattca--tttgtgtaatgctgct-gcatatgccttttatgtctgtttttt--tttatgctgcagGCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATG
||||||||         |||||    ||| ||| |  || || |||   |  | |    |   || | |   || | |||||||| || |||||||||||||||||| |||||||||| |||||||||||||| |||
gttcttatgcaacttgctcatttggttttctgttactctcctcgcactcgtttatggcttaccttctctagcttgtactgcagGCACGTTTCTTCTTCCAACAACTTGTATCAGGAGTCAGCTACTGTCATGCGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgtgtaatgctgctgcatatgccttttatgtctgtttttttttatgctgcagGCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATG
                        ccttttatgtctgttt  CT-rich tract
                          ttttatgtctgttttt  TA-rich tract