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...gcacattgttttttccttattggctgagatatcaagtcttctttgatatattgctgatttataatttattgacatttgagtttggttttgcattcaatagCTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGAGCAGAATGGAGCTGGAAGCTTTGAACAAAATGTGTGAACTTCTTGGTGG
species | Glycine max |
transcript | GLYMA02G14300.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG CTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGAEST: gi|62531354|gb|DN828683.1|DN828683
genomic: ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAGgtatctttct ... cattcaatagCTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGA
EST: ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG CTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGAEST: gi|61996841|gb|DN676662.1|DN676662
genomic: ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAGgtatctttct ... cattcaatagCTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGA
EST: ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG CTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGAEST: gi|51344946|gb|CO985679.1|CO985679
genomic: ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAGgtatctttct ... cattcaatagCTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGA
EST: ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG CTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGAEST: gi|12689507|gb|BG155843.1|BG155843
genomic: ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAGgtatctttct ... cattcaatagCTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGA
EST: ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG CTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGA
genomic: ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAGgtatctttct ... cattcaatagCTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGA
atatattgctgatttataatttattgacatttgagtttggttttgcattcaatagCTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGAGCAGAATGGAGCTGGAAGCTTTGAACAAAATGTGTGAACTTCTTGGTGG
tattgac putative branch site (score: 2)
atttataatttattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacattgttttttccttattggctgagatatcaagtcttctttgatatattgctgatttataatttattgacatttgagtttggttttgcattcaatagCTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGAGCAGAATGGAGCTGGAAGCTTTGAACAAAATGTGTGAACTTCTTGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttttg