Sequence
atgc intronic sequence ATGC exonic sequence...ttcacttgttcattttgcttctatgtttaatacactccagtaaagtgctttacttctatgtttaacttgatatagtgttttgcttctatgttcaatacagGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTATTGAGACAGGAAAAATGTCCAAATACAGTGGTGCTGAAACAACA
Basic information
species | Glycine max |
transcript | GLYMA02G14040.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G14040.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G016551_T01 (Zea mays), 3'ss of exon 1
------ttcacttgttcatttt--gcttctatgtttaatacactccagtaaagtgctttacttctatgtttaacttgatatagtgtt-ttgcttctatgttcaatacagGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTATTGAGACAGGAAAAATGTCCAAATACAGTGGTGCTGAAACAACA
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gtattttttaataaaaaatcctaggacagggtgtttgccattcttttgcaaactgat--actagcattatgacctaactgtattgttattgtgcctat---caa-acagATTTGCTCGTGTTGGCTCTGTTGTTTTAGCCCTTCATGATGCAAGTGATATATTCCTAGAGATTGGGAAGATGGCCAAGTACAGTAGCTGCGAGTGGCTA
upper sequence: GLYMA02G14040.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G13580.2 (Arabidopsis thaliana), 3'ss of exon 3
------ttcacttgttcattttgcttctatgtttaatacactccagtaaagtgctttacttctatgtttaacttgatatagtgttttgcttctatgttcaatacagGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTATTGAGACAGGAAAAATGTCCAAATACAGTGGTGCTGAAACAACA
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gtatgcttccatcgtcacatcctattctatactgaa-aaacagaactgattccttttgtccacattgttttgatcttcttgtttctttttctctttatcgctgtagCTTCTCCCGTGTTGGTTCTGTTGTTCTGGCACTTCACGATGCTAGTGATGTGTTTCTTGAGGTTGGGAAAATGTCTAAATATAGTGGAGCTGAAAGAATC
upper sequence: GLYMA02G14040.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0010g01110.t01 (Vitis vinifera), 3'ss of exon 3
ttcacttgttcattttgcttctatgtttaatacactccagtaaagtg---ctttacttctatgtttaacttgatatagtgttttgctt---ctatgttcaatacagGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTATTGAGACAGGAAAAATGTCCAAATACAGTGGTGCTGAAACAACA
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------aaaatgtttggatttcatagtaaataatcttttatgcaatatttctttctttctttctttcatcttttttttttttctctctgatttctgtctcttgcagATTCGCCCGTGTTGGTTCTGTTGTTTTAGCTCTTCATGATGCTAGTGATGTCTTTCTGGAGGTAGGGAAGATGTCCAAATACAAAGGTGCTGAAACCACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151396062|gb|EV265939.1|EV265939EST: GGCCATCATGTTATTACTGTCATTCTCATCGTGTTATCCTACATTTTTAG GTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGT
genomic: GGCCATCATGTTATTACTGTCATTCTCATCGTGTTATCCTACATTTTTAGgtatgttttt ... ttcaatacagGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctttacttctatgtttaacttgatatagtgttttgcttctatgttcaatacagGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTATTGAGACAGGAAAAATGTCCAAATACAGTGGTGCTGAAACAACA
tttaacttgatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcacttgttcattttgcttctatgtttaatacactccagtaaagtgctttacttctatgtttaacttgatatagtgttttgcttctatgttcaatacagGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTATTGAGACAGGAAAAATGTCCAAATACAGTGGTGCTGAAACAACA
- cacttgt
- - - - - - - -tgcttct
- - - - - - - - - - - - - - - - cactcca