1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttacatgatatattcttaacactccttgtccctgcaataatgcatatgcttgcacctgcatttgatgggccaataatccttgtcatgatttgtgattcagCTGATGATCATGTGGAAGTGGAGCAGCGAAAATGCATGGGCATGCATGCATCTTTGTTTTCTGCATACTCTGAGCGAGTAACCCCCAAGTGGCAGCATTT
species | Glycine max |
transcript | GLYMA02G12830.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGATATTGTTCCCCCGGGAATGCGCATCAGATGAGAGAATTATTTGATG CTGATGATCATCGTG-AAGTGGAGCAGCGAAAATGCCTGGGCATGCATGCAEST: gi|21256035|gb|BQ452923.1|BQ452923
genomic: GAGATATTGTTCCCCCGGGAATGCGCATCAGATGAGAGAATTATTTGATGgtatatatat ... tgtgattcagCTGATGATCAT-GTGGAAGTGGAGCAGCGAAAATGCATGGGCATGCATGCA
EST: GAGATATTGTTCCCCCGGGAATGCGCATCAGATGAGAGAATTATTTGATG CTGATGATCATGTGGAAGTGGAGCAGCGAAAATGCATGGGCATGCATGCAT
genomic: GAGATATTGTTCCCCCGGGAATGCGCATCAGATGAGAGAATTATTTGATGgtatatatat ... tgtgattcagCTGATGATCATGTGGAAGTGGAGCAGCGAAAATGCATGGGCATGCATGCAT
atgcttgcacctgcatttgatgggccaataatccttgtcatgatttgtgattcagCTGATGATCATGTGGAAGTGGAGCAGCGAAAATGCATGGGCATGCATGCATCTTTGTTTTCTGCATACTCTGAGCGAGTAACCCCCAAGTGGCAGCATTT
atttgat putative branch site (score: 5)
aataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacatgatatattcttaacactccttgtccctgcaataatgcatatgcttgcacctgcatttgatgggccaataatccttgtcatgatttgtgattcagCTGATGATCATGTGGAAGTGGAGCAGCGAAAATGCATGGGCATGCATGCATCTTTGTTTTCTGCATACTCTGAGCGAGTAACCCCCAAGTGGCAGCATTT
-tacatga
- - - - - - - - - - -ctccttg
- - - - - - - - - - - - - - -ccctgca
- - - - - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - -gcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt