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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggatgagaaaattgttgtctgaattaagaaccagttaaattaatcacatcctaattatatgaaattgcatatgcagTCTCACTATCCTTTCCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCCTAGCTCTCATACCACACAACTTGGACTTC

Basic information

species Glycine max
transcript GLYMA02G11320.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11320.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g02820.t01 (Vitis vinifera), 3'ss of exon 3
gtggatgagaaaat----------tgttgtctgaattaagaaccag-ttaaattaatcacatcct-aattatatgaaattgcatatgcagTCTCACTATCCTTTCCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCCTAGCTCTCATACCACACAACTTGGACTTC
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gtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcagTCTCACTATCCTCGCCCAGCTACCACATCTGCAAGCTTGCCATCTACTGTTAGTGGGCCTTTGCCAGATCTTAGTTCCCACAATGCACAGTTGGGACTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058869|gb|CA801783.1|CA801783
EST:     CACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAG                         TCTCACTATCCTTTCCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTA
genomic: CACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgaga ... gcatatgcagTCTCACTATCCTTTCCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattaagaaccagttaaattaatcacatcctaattatatgaaattgcatatgcagTCTCACTATCCTTTCCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCCTAGCTCTCATACCACACAACTTGGACTTC
                           tcctaat  putative branch site (score: 2)
                              taattatatgaaattg  TA-rich tract