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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggatgagaaaatatttatctgaattatgaatcagttaaattaaccacatcctaattatatggaattgcatatgcagTCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCCTAGCTCTCATACCACACAGCTTGGACTTC

Basic information

species Glycine max
transcript GLYMA02G11300.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11300.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g02820.t01 (Vitis vinifera), 3'ss of exon 3
gtggatgagaaaata----------tttatctgaattatgaatcag-ttaaattaaccacatcct-aattatatggaattgcatatgcagTCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCCTAGCTCTCATACCACACAGCTTGGACTTC
|||||| | |  ||           ||||| |   | ||| ||||  | || | |||   || || |||||     |||| | |||||||||||||||||||  ||| |  ||||||||| |||| ||||| ||| |||| |||||| ||||| | |||| ||| || || |   ||||| | |||||||
gtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcagTCTCACTATCCTCGCCCAGCTACCACATCTGCAAGCTTGCCATCTACTGTTAGTGGGCCTTTGCCAGATCTTAGTTCCCACAATGCACAGTTGGGACTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502262|gb|AW203635.1|AW203635
EST:     CACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAG                         TCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTG
genomic: CACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgaga ... gcatatgcagTCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTG
EST: gi|209697514|gb|BW670015.1|BW670015
EST:     CACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAG                         TCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTA
genomic: CACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgaga ... gcatatgcagTCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattatgaatcagttaaattaaccacatcctaattatatggaattgcatatgcagTCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCCTAGCTCTCATACCACACAGCTTGGACTTC
                           tcctaat  putative branch site (score: 2)
       aatcagttaaattaa  TA-rich tract