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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggaaaagtttgaaatttgaaagtgctaaacttttttttttctgttgatggagccttggaggatcctgatttctttatgttggtttttttctttttcctaattttgaagGTTTTGATTCACAACAACAGTCACTTGGCAAGTACTTATTGTGCCATTTCCATATTGAAAATTGTTGGTTATGAATTGTCCAATCTTGACTCTGAAACAA

Basic information

species Glycine max
transcript GLYMA02G10280.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523395|gb|BU082206.1|BU082206
EST:     ATGGCTTTCATGGATCCAAAACTTCACAGTTTCCTCCAGATGAGAATGGT                         GTTTTGATTCACAACGACAGTCACTTGGCAAGTACTTATTGTGCCATTTCC
genomic: ATGGCTTTCATGGATCCAAAACTTCACAGTTTCCTCCAGATGAGAATGGGgtatggaaaa ... aattttgaagGTTTTGATTCACAACAACAGTCACTTGGCAAGTACTTATTGTGCCATTTCC
EST: gi|26269407|gb|CA820470.1|CA820470
EST:     ATGGCTTTCATGGATCCAAAACTTCACAGTTTCCTCCAGATGAGAATGGG                         GTTTTGATTCACAACAACAGTCACTTGGCAAGTACTTATTGTGCCATTTCC
genomic: ATGGCTTTCATGGATCCAAAACTTCACAGTTTCCTCCAGATGAGAATGGGgtatggaaaa ... aattttgaagGTTTTGATTCACAACAACAGTCACTTGGCAAGTACTTATTGTGCCATTTCC
EST: gi|208118081|gb|GD920045.1|GD920045
EST:     CAAAACTTCACAGTTTCCTCCAGATGAGAATGGG                         GTTTTGATTCACAACAACAGTCACTTGGCAAGTACTTATTGTGCCATTTCC
genomic: CAAAACTTCACAGTTTCCTCCAGATGAGAATGGGgtatggaaaa ... aattttgaagGTTTTGATTCACAACAACAGTCACTTGGCAAGTACTTATTGTGCCATTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggaggatcctgatttctttatgttggtttttttctttttcctaattttgaagGTTTTGATTCACAACAACAGTCACTTGGCAAGTACTTATTGTGCCATTTCCATATTGAAAATTGTTGGTTATGAATTGTCCAATCTTGACTCTGAAACAA
                                         tcctaat  putative branch site (score: 2)
                             tttttttctttttcct  CT-rich tract
                             tttttttctttttcct  TA-rich tract