1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aatggctgaaatattaatggagttattggttgtttacccttaattttctgctatattacttagtattgtcattgatatttagattcttgagatgcactagGTTATGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATAAAGAAGTGCAG
species | Glycine max |
transcript | GLYMA02G09680.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGCTTTGACAGTGCCTTTCTTCGACTGGTTAGTTGGGCCATCTGAG GTTATGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATAEST: gi|51336380|gb|CO980246.1|CO980246
genomic: ATGCTGCTTTGACAGTGCCTTTCTTCGACTGGTTAGTTGGGCCATCTGAGgtaattttat ... gatgcactagGTTATGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATA
EST: ATGCTGCTTTGACAGTGCCTTTCTTCGACTGGTTAGTTGGGCCATCTGAG GTTATGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATA
genomic: ATGCTGCTTTGACAGTGCCTTTCTTCGACTGGTTAGTTGGGCCATCTGAGgtaattttat ... gatgcactagGTTATGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATA
ttctgctatattacttagtattgtcattgatatttagattcttgagatgcactagGTTATGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATAAAGAAGTGCAG
cattgat putative branch site (score: 4)
tatattacttagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggctgaaatattaatggagttattggttgtttacccttaattttctgctatattacttagtattgtcattgatatttagattcttgagatgcactagGTTATGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATAAAGAAGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT