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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttactgtttgtgccagatgcatgcttgtccttttttggttatgtagttgattggtcaaaagttgtagtgtcctctttgtgctgaaatgcttgttcattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAG

Basic information

species Glycine max
transcript GLYMA02G09230.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G09230.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0166g00240.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtttactgtttgtgccagatgcatgcttgtccttttttggttatgtagttgattggtcaaaagttgtagtgtcctctttgtgctgaaatgcttgtt-cattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAG
|||||||      ||||   | |  |     |||||    | ||      | |||  | ||||    | ||    ||    |  | ||    | | |  |   |||||||||||| ||||||||| |  ||||||||| ||||| ||| |||  ||||| ||||| ||||||||  ||||||| |||||||
gtaagtt----acttgtaataaacactccactgtcc----taggcc---cacttggctagtcagttttcgttacatcactgtgattctcttcttcatactgttttgcagCGTGGTAGAGATCCTCTTGTCCTTTGTTTCGTGGATTTTACAAGCCCAGCCTGTGCTGCAACTGCATTGAGTGCTTTGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31468662|gb|CD410690.1|CD410690
EST:     CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACAT                         CGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCT
genomic: CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACATgtaagtttac ... ttcattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCT
EST: gi|209711714|gb|BW676853.1|BW676853
EST:     CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACAT                         CGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCT
genomic: CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACATgtaagtttac ... ttcattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCT
EST: gi|192303504|gb|FG998598.1|FG998598
EST:     CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACAT                         CGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCT
genomic: CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACATgtaagtttac ... ttcattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattggtcaaaagttgtagtgtcctctttgtgctgaaatgcttgttcattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAG
 agttgat  putative branch site (score: 5)
                                         cttgttc  putative PPT
         aaaagtt  TA-rich tract