1 5' 3' | 2 5' 3' | 3 5' 3' |
...aatattgcttgaaatttgtcaagttgcagatctttcatttgcttgtttcaaatttaaacacatgaatatcaatcaacatggctacaatatgtgattgcagATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTACTCGTTTGGGTGCTATTGGTGGTAACCCTTCTTTTGGTGGGATATTCAA
species | Glycine max |
transcript | GLYMA02G09140.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCAAACTGCGTTTAGAGGCTTTGGAGCAGGAAGCACAGCTTAGAGAAG ATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTAEST: gi|26269532|gb|CA820595.1|CA820595
genomic: GCTCAAACTGCGTTTAGAGGCTTTGGAGCAGGAAGCACAGCTTAGAGAAGgtatgcatca ... gtgattgcagATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTA
EST: GCTCAAACTGCGTTTAGAGGCTTTGGAGCAGGAAGCACAGCTTAGAGAAG ATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAATTAEST: gi|21888328|gb|BQ741541.1|BQ741541
genomic: GCTCAAACTGCGTTTAGAGGCTTTGGAGCAGGAAGCACAGCTTAGAGAAGgtatgcatca ... gtgattgcagATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTA
EST: GCTCAAACTGCGTTTAGAGGCTTTGGAGCAGGAAGCACAGCTTAGAGAAG ATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTAEST: gi|120492567|gb|EH220734.1|EH220734
genomic: GCTCAAACTGCGTTTAGAGGCTTTGGAGCAGGAAGCACAGCTTAGAGAAGgtatgcatca ... gtgattgcagATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTA
EST: GCTCAAACTGCGTTTAGAGGCTTTGGAGCAGGAAGCACAGCTTAGAGAAG ATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTAEST: gi|120496222|gb|EH224389.1|EH224389
genomic: GCTCAAACTGCGTTTAGAGGCTTTGGAGCAGGAAGCACAGCTTAGAGAAGgtatgcatca ... gtgattgcagATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTA
EST: CTCAAACTGCGTTTAGAGGCTTTGGAGCAAGGAAGCACAGCTTAGAGAAG ATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTAEST: gi|16342552|gb|BI968147.1|BI968147
genomic: CTCAAACTGCGTTTAGAGGCTTTGGAGC-AGGAAGCACAGCTTAGAGAAGgtatgcatca ... gtgattgcagATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTA
EST: GCTCAAACTGCGTTTAGAGGCTTTGGAGCAGGAAGCACAGCTTAGAGAAG ATCTCAATGAGGCATTGAAGGAAGAACTGCACCGCCTTAGGGCACAAAGTA
genomic: GCTCAAACTGCGTTTAGAGGCTTTGGAGCAGGAAGCACAGCTTAGAGAAGgtatgcatca ... gtgattgcagATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTA
tttcaaatttaaacacatgaatatcaatcaacatggctacaatatgtgattgcagATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTACTCGTTTGGGTGCTATTGGTGGTAACCCTTCTTTTGGTGGGATATTCAA
aatttaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattgcttgaaatttgtcaagttgcagatctttcatttgcttgtttcaaatttaaacacatgaatatcaatcaacatggctacaatatgtgattgcagATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTACTCGTTTGGGTGCTATTGGTGGTAACCCTTCTTTTGGTGGGATATTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - -tgcttga
- - - - - - - - - - - gttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggct