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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaggatgagagttttgttcttaatgtcttaattcttaaatgttacctctggtcatcactaactaaaacttcttttctttacgtagCTACTGATGCCTGGCTTGCAAATCCAGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAATATTCGCCGGGCTGAGCATTTTATTCATGTTTT

Basic information

species Glycine max
transcript GLYMA02G09080.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G09080.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G03190.2 (Arabidopsis thaliana), 3'ss of exon 3
--------gtatgtaggatgagagttt-tgttcttaatgtcttaattcttaaatgttacctctggtcatcactaactaaaacttcttttctttacgtagCTACTGATGCCTGGCTTGCAAATCCAGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAATATTCGCCGGGCTGAGCATTTTATTCATGTTTT
        || |  |||| |    | | || | | | ||     |  |   ||  || |   |  |    |||      |||   |||| |||  | ||    ||||   ||||||||||| || ||  ||||| ||||||| |||||||||||||| || || |||||| | ||||||||||||||| | ||||||||
gtaagtatgtgttcaggaaggtgatctgtgatttgattgaaagcacacagtaaattttctaattctatgaacttgacgcaacaattttttttt-tgcagGAGGTGATCAATGGCTTGCAAACCCTGCACTGCCTCATGATATTCTAAAGGAGGCTGTCCCGGGGAATATTAGACGGGCTGAGCATTTTGTGCATGTTTT

upper sequence: GLYMA02G09080.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 3
gtatgtaggatg----agagt-----tttgttcttaatgtcttaa-----ttcttaaatgttacctctggtcatcactaactaaaacttcttttctttacgtagCTACTGATGCCTGGCTTGCAAATCCAGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAATATTCGCCGGGCTGAGCATTTTATTCATGTTTT
||| || | |||    | |||     ||  ||  ||| |||| ||     || || ||||     |||  | |  |  || |   || |  ||  ||| || || | | ||  |||||||||| ||||| || |||||||||||||| || ||||||||||| || ||||||||||| || || ||||||||  |   ||||||
gtaagtggaatgccttatagtgatggttcattaataaagtctaaaaacattttttgaatgcacaatctattgacta--aagttggacatgcttctttttcgcagTTTCAGACACCTGGCTTGCGAATCCTGCTTTGCCTGATGATATTCTGAAGGAGGCTGTGCCAGGAAATATTCGGCGAGCAGAGCATTTCTTGTCTGTTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttaaatgttacctctggtcatcactaactaaaacttcttttctttacgtagCTACTGATGCCTGGCTTGCAAATCCAGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAATATTCGCCGGGCTGAGCATTTTATTCATGTTTT
                                     cttcttttctttacgt  CT-rich tract
     taaatgtta  TA-rich tract