1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttttcttcatgcattcaatgtattttctgttttccttagattcttagaattcaaggctgaattattactaaatattttcttttatttgtataatctattgctcttgcagGCTCTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAATTTTATGCAAATGTCCAGCCAAGCATAAG
species | Glycine max |
transcript | GLYMA02G08870.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCCTTTTGGAGTAATAACAAAGCTTGTGATGTTGCGTGCCAAAAATCAG GCTCTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAATTTEST: gi|7684949|gb|AW755597.1|AW755597
genomic: AGCCTTTTGGAGTAATAACAAAGCTTGTGATGTTGCGTGCCAAAAATCAGgttttcttca ... gctcttgcagGCTCTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAATTT
EST: AGCCTTTTGGAGTAATAACAAAGCTTGTGATGTTGCGTGCCAAAAATCAG GCTCTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAATTT
genomic: AGCCTTTTGGAGTAATAACAAAGCTTGTGATGTTGCGTGCCAAAAATCAGgttttcttca ... gctcttgcagGCTCTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAATTT
ggctgaattattactaaatattttcttttatttgtataatctattgctcttgcagGCTCTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAATTTTATGCAAATGTCCAGCCAAGCATAAG
tactaaa putative branch site (score: 1)
ttgctctt putative PPT
aattattactaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttcttcatgcattcaatgtattttctgttttccttagattcttagaattcaaggctgaattattactaaatattttcttttatttgtataatctattgctcttgcagGCTCTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAATTTTATGCAAATGTCCAGCCAAGCATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG