1 5' 3' | 2 5' 3' | 3 5' 3' |
...atttcctgctacttcttaatagggtctctttgtgcccttgttaagttgtgcatattattaggtaataacactaacatcttgtattcttactattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCACACTAAGACTACTGGTCGCAGGGGTAAAACTGTTGGTGTCTCTAAGAAG
species | Glycine max |
transcript | GLYMA02G08690.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAG AAATCACCGTGGTTTGAGGCACTACTGGGGTCTEST: gi|192334343|gb|FK024414.1|FK024414
genomic: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAGgtgattcatt ... tattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCT
EST: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAG AAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCAEST: gi|192305187|gb|FG993953.1|FG993953
genomic: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAGgtgattcatt ... tattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCA
EST: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAG AAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGCTCGTGGTCAGCAEST: gi|298177533|gb|HO027200.1|HO027200
genomic: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAGgtgattcatt ... tattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCA
EST: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAG AAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCAEST: gi|298193318|gb|HO033752.1|HO033752
genomic: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAGgtgattcatt ... tattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCA
EST: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAG AAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCAEST: gi|192334314|gb|FK024413.1|FK024413
genomic: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAGgtgattcatt ... tattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCA
EST: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAG AAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCAEST: gi|192305202|gb|FG993954.1|FG993954
genomic: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAGgtgattcatt ... tattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCA
EST: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAG AAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGCTCGTGGTCAGCAEST: gi|298190114|gb|HO032235.1|HO032235
genomic: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAGgtgattcatt ... tattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCA
EST: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAG AAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCAEST: gi|298179933|gb|HO025148.1|HO025148
genomic: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAGgtgattcatt ... tattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCA
EST: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAG AAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCA
genomic: GCACTGGATATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAAATCAGgtgattcatt ... tattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCA
ttgtgcatattattaggtaataacactaacatcttgtattcttactattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCACACTAAGACTACTGGTCGCAGGGGTAAAACTGTTGGTGTCTCTAAGAAG
ttcttact CT-rich tract
atattattaggtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcctgctacttcttaatagggtctctttgtgcccttgttaagttgtgcatattattaggtaataacactaacatcttgtattcttactattatgcagAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGTCAGCACACTAAGACTACTGGTCGCAGGGGTAAAACTGTTGGTGTCTCTAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - -ctgctac
- - - - - - - - - - - - - - - - tgccctt
- - - - - - - - - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactaac