1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacagaagactcgtttctgttattgattattgattttgctactctattattgatttcattataaactttccctgtatatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAAGTTCTGCTTGAGGAGGCTAAAGAAAGTTACTCAGAGGAGAAACTGATT
species | Glycine max |
transcript | GLYMA02G08350.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAG GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAEST: gi|298172882|gb|HO019866.1|HO019866
genomic: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAG GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAEST: gi|298189345|gb|HO037748.1|HO037748
genomic: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAG GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAEST: gi|298167337|gb|HO010776.1|HO010776
genomic: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAG GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGEST: gi|298177390|gb|HO027171.1|HO027171
genomic: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATG
EST: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAG GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAEST: gi|7684843|gb|AW755491.1|AW755491
genomic: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAG GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
gattttgctactctattattgatttcattataaactttccctgtatatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAAGTTCTGCTTGAGGAGGCTAAAGAAAGTTACTCAGAGGAGAAACTGATT
tattgat putative branch site (score: 3)
tctattattgatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagaagactcgtttctgttattgattattgattttgctactctattattgatttcattataaactttccctgtatatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAAGTTCTGCTTGAGGAGGCTAAAGAAAGTTACTCAGAGGAGAAACTGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA