1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttgacatagtaaaatatcacacattcatgtttattgagaatggttcaatacattgtttagtgtatgcttacttacatctgtttcatttgcagGATATTAGTGGGGTGCCAAAGAAGAGCAGCTGGGACATGATTGTGGATACTACTTCTCTTGTAAACAAGGAATCAAGGAAAGCTATGCAGCTTTTACAAG
species | Glycine max |
transcript | GLYMA02G08210.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCATTTCAGTAATTGTGGACAAATTTTAGATCAGCGTATTAATCCTTCT GATATTAGTGGGGTGCCAAAGAAGGGCAGCTGGGACATGATTGTGGATACTEST: gi|192305970|gb|FG993616.1|FG993616
genomic: TTCATTTCAGTAATTGTGGACAAATTTTAGATCAGCGTATTAACCCTTCTgtaagttgac ... tcatttgcagGATATTAGTGGGGTGCCAAAGAAGAGCAGCTGGGACATGATTGTGGATACT
EST: TACATTTCAGTAATTGTGGACAAATTTTAGATCAGCGTATTAACCCTTCT GATATTAGTGGGGTGCCAAAGAAGAGCAGCTGGGACATGATTGTGGATACT
genomic: TTCATTTCAGTAATTGTGGACAAATTTTAGATCAGCGTATTAACCCTTCTgtaagttgac ... tcatttgcagGATATTAGTGGGGTGCCAAAGAAGAGCAGCTGGGACATGATTGTGGATACT
gaatggttcaatacattgtttagtgtatgcttacttacatctgtttcatttgcagGATATTAGTGGGGTGCCAAAGAAGAGCAGCTGGGACATGATTGTGGATACTACTTCTCTTGTAAACAAGGAATCAAGGAAAGCTATGCAGCTTTTACAAG
tacttac putative branch site (score: 1)
tctgtttc CT-rich tract
aatacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgacatagtaaaatatcacacattcatgtttattgagaatggttcaatacattgtttagtgtatgcttacttacatctgtttcatttgcagGATATTAGTGGGGTGCCAAAGAAGAGCAGCTGGGACATGATTGTGGATACTACTTCTCTTGTAAACAAGGAATCAAGGAAAGCTATGCAGCTTTTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT