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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctttgactcagggaaatacgttttttttttttcttatattttgggcttttctaggtgtattatgattatgcacttatgcttcctctttaggggctgaagaatctcttattctcaatgttttgtgacagGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG

Basic information

species Glycine max
transcript GLYMA02G07830.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07830.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G18230.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtctttgactcagggaaatacgttttttttttttcttatattt-tgggcttttctaggtgtattatgattatgcacttatgcttcctctttag--gggctgaagaatctcttattctcaatgttttgtgacagGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG
                                 | | |   |||||  | ||   || ||  | ||||||   |   |    |  ||||     ||    |||| |   || | | |   ||| |||||| |   |||| || | |||||| || || ||||||||||||||||||||||||||||||
--------------------------------atctgttggatattcgtaggtagttatatatatattatatattaacgaaaactcttctctggtattcaggct-actgatttgtcagcttca-tgttttat---agGACCCAAAAGAGAAAGCAAAGTCAGAGACAAGGGATTGGTTGAACAATGTG

upper sequence: GLYMA02G07830.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtctttgactcagggaaatacgttttttttttttcttatattttgggcttttctaggtgtattatga-ttatgcacttatgcttcctctttaggggctgaagaatctcttattctcaatgttttgtgacagGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG
                                   |||  ||||   |   ||  | |||   | || | | || |  | |    | |  |  | ||    ||   |   | | |||||     |||| ||| |||| || |  |||||||||||||||||||||||||| |||||||||| ||||
----------------------------gcaccggtttaatataaagtactctaatttagtcatgttttaaattttaaaatctaaccttttaatcaga--ttgtttatcatgtaattct-----ttttttgatagGACCCAAAGGAGAAGGCTAAATCAGAGACAAGGGACTGGTTGAACACTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193705050|gb|FK641880.1|FK641880
EST:     CAAAAACAAAAGCATTCTCCAAAGAAGGCTTAGGTCAACAGCCTAAAACT                         GATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG
genomic: CAAAAACAAAAGCATTCTCCAAAGAAGGCTTAGGTCAACAGCCTAAAACTgtgagtcttt ... tttgtgacagGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG
EST: gi|213599213|gb|DB959995.1|DB959995
EST:     CAAAAACAA--GCATTCTCCAAAGAAGGCTTAGGTCAACAGCCTAAAACT                         GATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG
genomic: CAAAAACAAAAGCATTCTCCAAAGAAGGCTTAGGTCAACAGCCTAAAACTgtgagtcttt ... tttgtgacagGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgcttcctctttaggggctgaagaatctcttattctcaatgttttgtgacagGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG
                                        aatgtttt  TA-rich tract