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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaataagatatctatttcttttatttgtagaaatcgatcacaggtaccgggggatttacagcaattcacgctgctaaatcaattaaactaaaaaaccgatgtactactaacattttacatttgtttgttgtatagaaaattgacaacattttatttgttcgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCC

Basic information

species Glycine max
transcript GLYMA02G07180.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07180.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G54890.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagaataagatatctatttcttttatttgtagaaatcgatcacaggtaccgggggatttacagcaattcacgctgctaaatcaattaaactaaaaaaccgatgtactactaacat-tttacatttgtttgttgtatagaaaattgacaacattttatttgttcgatgtt-tagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCC
                                                                                    ||  | ||  || |||  |  |      | ||   |||  |     |||  |||  ||  |||      ||||  ||| | | |||   ||| || |||||  ||||||| ||||| ||||||||||| ||||| || ||||| || || || ||||| ||||||||||||||  |||||||||| || ||
----------------------------------------------------------------------------------gtaagcacacacaacaacttacctttcttgatcaaacttatgtacaaatgt-atatctaatgttggtg-ttttttgcttggtgggtgtaacagGGCGGCTTGCGCTGTTGGCGTTTGTAGGATTCTGTGTGCAACAGTCGGCTTACCCGGGGACAGGACCATTGGAGAACTTGGCAACTCACTTGGCGGATCC

upper sequence: GLYMA02G07180.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0019g04140.t01 (Vitis vinifera), 3'ss of exon 3
gtaagaataagatatctatttcttttatttgtagaaatcgatcacaggtaccgggggatttacagcaattcacgctgctaaatcaattaaactaaaaaaccgatgtactactaacattttacatttgtttgttgtatagaaaattgacaacattttatttgttcgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCC
                                                                   | |||  || || |  || |  ||||   |   |   || |  ||||     || |    |   |  | |     ||| ||  | |  | |||  || ||||  ||| || |||||  | ||||| || || || ||||| || ||||| || ||||||||||| || ||||| ||||||||  ||||| |||||||||| |||||
-------------------------------------------------------------gtgaacactcattctcctta--cactctaactcccatgtca--gttcccctaaatgcctatacgattagctcatctc----attcac--cttgctttttcctcaatgtgcagGCCGCCTTGCAATTTTGGCGTTCGTCGGGTTCTGCGTCCAACAGTCGGCTTATCCCGGAACAGGACCATTGGAGAATCTGGCTTCTCACTTGGCAGACCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10232998|gb|BE801886.1|BE801886
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209704928|gb|BW661718.1|BW661718
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|151413237|gb|EV283045.1|EV283045
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|151396055|gb|EV265932.1|EV265932
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31474263|gb|CD416291.1|CD416291
EST:     TAAGGACCCTAAAACATTCCATGTATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCT
EST: gi|31469128|gb|CD411156.1|CD411156
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31473013|gb|CD415041.1|CD415041
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|17153969|gb|BM143902.1|BM143902
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31308433|gb|CD393636.1|CD393636
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|21676313|gb|BQ628664.1|BQ628664
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31469587|gb|CD411615.1|CD411615
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31310703|gb|CD395906.1|CD395906
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31459052|gb|CD401080.1|CD401080
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31311120|gb|CD396323.1|CD396323
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|151409557|gb|EV279365.1|EV279365
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|308099044|gb|HO760885.1|HO760885
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|22522351|gb|BU081162.1|BU081162
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|15284720|gb|BI468611.1|BI468611
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31311696|gb|CD396899.1|CD396899
EST:     GAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: GAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|7692781|gb|AW760880.1|AW760880
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCGAAGAACTTAAGAATG                         GACGTCTTGCTATGTCTG-CTTTTGTGGGATTCTGTGTTCAACAATCAGCT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGT-TGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCT
EST: gi|31463841|gb|CD405869.1|CD405869
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCCACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|20813463|gb|BQ297941.1|BQ297941
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31475116|gb|CD417144.1|CD417144
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|208200112|gb|GE000816.1|GE000816
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31468145|gb|CD410173.1|CD410173
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31472169|gb|CD414197.1|CD414197
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31459662|gb|CD401690.1|CD401690
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209726657|gb|BW666576.1|BW666576
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|10844342|gb|BF067651.1|BF067651
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|5677734|gb|AI938873.1|AI938873
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|17518597|gb|BM187639.1|BM187639
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGGAT-CTGTGTTCA
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGG-ATTCTGTGTTCA
EST: gi|31472462|gb|CD414490.1|CD414490
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31458565|gb|CD400593.1|CD400593
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31466883|gb|CD408911.1|CD408911
EST:     TAAGGACCCTAAAACATTCCATGAATACCAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209709578|gb|BW661905.1|BW661905
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|151396673|gb|EV266546.1|EV266546
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31458543|gb|CD400571.1|CD400571
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|51343606|gb|CO984339.1|CO984339
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209709625|gb|BW661952.1|BW661952
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209720958|gb|BW682437.1|BW682437
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|21602032|gb|BQ612363.1|BQ612363
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|9563886|gb|BE473395.1|BE473395
EST:     TAAGGACCCTACAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTGTCGTGG-ATTCTGTGTG-AACAAATCAGC
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTT-GTGGGATTCTGTGTTCAACAA-TCAGC
EST: gi|7326459|gb|AW620268.1|AW620268
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31468880|gb|CD410908.1|CD410908
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31462956|gb|CD404984.1|CD404984
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|192296508|gb|FG989124.1|FG989124
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|192300127|gb|FG992235.1|FG992235
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31458397|gb|CD400425.1|CD400425
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31311710|gb|CD396913.1|CD396913
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209726512|gb|BW658079.1|BW658079
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCA-CAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31470399|gb|CD412427.1|CD412427
EST:     TAAGGACCCTAAATCATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|15814735|gb|BI787010.1|BI787010
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|120495919|gb|EH224086.1|EH224086
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|10234733|gb|BE803621.1|BE803621
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTATTGCTTTGATGGCTTTTGTGGGATTCTGTGCTCAACAATCAACTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31473770|gb|CD415798.1|CD415798
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|151396425|gb|EV266302.1|EV266302
EST:     TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGgtaagaataa ... cgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacatttgtttgttgtatagaaaattgacaacattttatttgttcgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCC
                       aattgac  putative branch site (score: 3)
                                       tttgttc  putative PPT
                     aaaattgacaacattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagaataagatatctatttcttttatttgtagaaatcgatcacaggtaccgggggatttacagcaattcacgctgctaaatcaattaaactaaaaaaccgatgtactactaacattttacatttgtttgttgtatagaaaattgacaacattttatttgttcgatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT