1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaagccacatagcagatgaagtttgtgtgtttctaaacaagttcatacatatttcttgaaaataaacagactaacacatgtgtcacaatcacatattcagGTCTTTACAATACCTGTTGCCCCGGGAGATGTTGTCGTTGTTGGAACAGATGGATTGTTTGACAATCTGTACAATGAAGAGGTTGCTGAAATTGTTTTAG
species | Glycine max |
transcript | GLYMA02G06520.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGAGCGGCAATGGAGGTGATCTACCTAGCTCTGGTGAG GTCTTTACAATACCTGTTGCCCCGGGAGATGTTGTCGTTGTTGGAACAGAT
genomic: GAGAGCGGCAATGGAGGTGATCTACCTAGCTCTGGTGAGgtaagttctc ... acatattcagGTCTTTACAATACCTGTTGCCCCGGGAGATGTTGTCGTTGTTGGAACAGAT
tacatatttcttgaaaataaacagactaacacatgtgtcacaatcacatattcagGTCTTTACAATACCTGTTGCCCCGGGAGATGTTGTCGTTGTTGGAACAGATGGATTGTTTGACAATCTGTACAATGAAGAGGTTGCTGAAATTGTTTTAG
gactaac putative branch site (score: 1)
atttcttgaaaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagccacatagcagatgaagtttgtgtgtttctaaacaagttcatacatatttcttgaaaataaacagactaacacatgtgtcacaatcacatattcagGTCTTTACAATACCTGTTGCCCCGGGAGATGTTGTCGTTGTTGGAACAGATGGATTGTTTGACAATCTGTACAATGAAGAGGTTGCTGAAATTGTTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- -gccacat
- - - - - -gcagatg
- - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - ctaaaca
- - - - - - - - - - - - - - - - - - - - - tcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcaca